| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagaatac | 8 | ||
| MIMAT0020241 | egr-miR-124b-5p | 8 | ........ | 1 | 100 |
| MIMAT0002192 | kshv-miR-K12-4-3p | 1 | ........ | 8 | 100 |
| MIMAT0035583 | dvi-miR-964-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028649 | mdo-miR-7324-3p | 1 | ......._ | 7 | 87 |
| MIMAT0016069 | ppy-miR-630 | 8 | _....... | 2 | 87 |
| MIMAT0012475 | dsi-miR-964-5p | 2 | ......._ | 8 | 87 |
| MIMAT0008288 | ptr-miR-630 | 8 | _....... | 2 | 87 |
| MIMAT0005478 | dme-miR-964-5p | 2 | ......._ | 8 | 87 |
| MIMAT0003299 | hsa-miR-630 | 8 | _....... | 2 | 87 |
| MIMAT0034306 | cfa-miR-8816 | 1 | ......c. | 8 | 87 |
| MIMAT0031599 | bbe-miR-182d-3p | 1 | ......t. | 8 | 87 |
| MIMAT0023578 | tca-miR-6018-3p | 1 | ......t. | 8 | 87 |
| MIMAT0020484 | bfl-miR-182d | 1 | ......t. | 8 | 87 |
| MIMAT0001009 | ath-miR406 | 1 | ......g. | 8 | 87 |
| MIMAT0037006 | ssc-miR-9789-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036864 | oha-miR-26-3-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036102 | chi-miR-26a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035635 | dvi-miR-9547-3p | 8 | __...... | 3 | 75 |
| MIMAT0035579 | dvi-miR-958-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035570 | dvi-miR-927-5p | 3 | ......__ | 8 | 75 |
| MIMAT0034266 | gra-miR8638 | 2 | __...... | 7 | 75 |
| MIMAT0033382 | str-miR-8373-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033353 | str-miR-5359-3p | 3 | _......_ | 8 | 75 |
| MIMAT0033173 | ppc-miR-8317b-3p | 1 | __...... | 6 | 75 |
| MIMAT0032748 | ssa-miR-8161-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032746 | ssa-miR-8160-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032570 | ssa-miR-26b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032566 | ssa-miR-26a-4-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032564 | ssa-miR-26a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031011 | hsa-miR-8084 | 1 | __...... | 6 | 75 |
| MIMAT0030910 | stu-miR8014-3p | 3 | __...... | 8 | 75 |
| MIMAT0030792 | prd-miR-234-5p | 8 | __...... | 3 | 75 |
| MIMAT0030326 | bdi-miR7785-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032223 | lva-miR-2002-3p | 2 | __...... | 7 | 75 |
| MIMAT0032176 | pmi-miR-2002-3p | 2 | __...... | 7 | 75 |
| MIMAT0029590 | cbr-miR-7587 | 3 | ......__ | 8 | 75 |
| MIMAT0028996 | oan-miR-7423-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028730 | mdo-miR-7359-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025470 | hsa-miR-6507-5p | 3 | _......_ | 8 | 75 |
| MIMAT0024990 | hme-miR-927 | 3 | ......__ | 8 | 75 |
| MIMAT0023707 | hsa-miR-6082 | 1 | __...... | 6 | 75 |
| MIMAT0023579 | tca-miR-927b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023346 | hco-miR-5900 | 7 | ......__ | 2 | 75 |
| MIMAT0022828 | sha-miR-26a | 8 | _......_ | 3 | 75 |
| MIMAT0023098 | tur-miR-137-5p | 8 | __...... | 3 | 75 |
| MIMAT0022327 | cin-miR-5596b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022130 | osa-miR5497 | 2 | _......_ | 7 | 75 |
| MIMAT0021504 | asu-miR-228-3p | 7 | __...... | 2 | 75 |
| MIMAT0021499 | asu-miR-234-5p | 8 | __...... | 3 | 75 |
| MIMAT0021010 | gma-miR4992 | 6 | ......__ | 1 | 75 |
| MIMAT0020075 | spu-miR-4852 | 7 | ......__ | 2 | 75 |
| MIMAT0018324 | gma-miR4405 | 6 | ......__ | 1 | 75 |
| MIMAT0018648 | tca-miR-3813-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016898 | hsa-miR-4263 | 6 | ......__ | 1 | 75 |
| MIMAT0016803 | cin-miR-4185-3p | 7 | __...... | 2 | 75 |
| MIMAT0016760 | cin-miR-4155-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016406 | cin-miR-125-3p | 8 | __...... | 3 | 75 |
| MIMAT0016316 | sja-miR-3507 | 3 | _......_ | 8 | 75 |
| MIMAT0016017 | ppy-miR-576-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017758 | esi-miR3450-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015574 | bmo-miR-3381-3p | 6 | __...... | 1 | 75 |
| MIMAT0015445 | bmo-miR-3261 | 1 | ......__ | 6 | 75 |
| MIMAT0014784 | api-miR-3045a | 2 | _......_ | 7 | 75 |
| MIMAT0014754 | api-miR-3018 | 3 | _......_ | 8 | 75 |
| MIMAT0014740 | api-miR-927 | 3 | ......__ | 8 | 75 |
| MIMAT0026980 | tgu-miR-26-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031030 | mdo-miR-26-3-3p | 8 | _......_ | 3 | 75 |
| MIMAT0013739 | bmo-miR-2808b | 3 | ......__ | 8 | 75 |
| MIMAT0013711 | bmo-miR-2808a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013704 | bmo-miR-2800 | 1 | _......_ | 6 | 75 |
| MIMAT0013400 | mtr-miR2634 | 8 | _......_ | 3 | 75 |
| MIMAT0012483 | dsi-miR-927-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012445 | dsi-miR-958-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012269 | dps-miR-927-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012231 | dps-miR-958-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012157 | sme-miR-2165-5p | 8 | ......__ | 3 | 75 |
| MIMAT0010102 | aga-miR-927 | 3 | ......__ | 8 | 75 |
| MIMAT0009768 | nve-miR-2024f-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009765 | nve-miR-2024d | 1 | _......_ | 6 | 75 |
| MIMAT0009763 | nve-miR-2024c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009743 | spu-miR-2002-3p | 2 | __...... | 7 | 75 |
| MIMAT0009157 | bmo-miR-927-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032090 | dvi-miR-6-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008391 | tca-miR-927a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019127 | tca-miR-283-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006492 | mml-miR-651 | 3 | ......__ | 8 | 75 |
| MIMAT0006436 | mml-miR-576-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031062 | mml-miR-26a-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005033 | cel-miR-1020-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005501 | dme-miR-927-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020852 | dme-miR-958-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012119 | sme-miR-277a-5p | 8 | __...... | 3 | 75 |
| MIMAT0003241 | hsa-miR-576-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026574 | mml-miR-26a-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026501 | gga-miR-26a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017100 | rno-miR-26a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004681 | hsa-miR-26a-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017020 | mmu-miR-26a-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020330 | cel-miR-234-5p | 8 | __...... | 3 | 75 |
| MIMAT0004499 | hsa-miR-26a-1-3p | 8 | _......_ | 3 | 75 |
