| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagacacc | 8 | ||
| MIMAT0033531 | sma-miR-8413-3p | 8 | ........ | 1 | 100 |
| MIMAT0030935 | stu-miR8031 | 2 | ......._ | 8 | 87 |
| MIMAT0030798 | prd-miR-7956-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028992 | oan-miR-7421-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027895 | mmu-miR-6996-3p | 8 | _....... | 2 | 87 |
| MIMAT0020334 | cel-miR-239a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0034611 | eca-miR-9066 | 1 | ......a. | 8 | 87 |
| MIMAT0022462 | gma-miR5676 | 1 | .c...... | 8 | 87 |
| MIMAT0014496 | tgu-miR-2986 | 1 | .g...... | 8 | 87 |
| MIMAT0007102 | oan-miR-1422n-3p | 1 | ......a. | 8 | 87 |
| MIMAT0037215 | ata-miR1432-3p | 8 | __...... | 3 | 75 |
| MIMAT0037072 | ssc-miR-9853-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036012 | chi-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0035346 | gsa-miR-9400-5p | 1 | ......__ | 6 | 75 |
| MIMAT0034755 | eca-miR-9175 | 1 | ......__ | 6 | 75 |
| MIMAT0034648 | eca-miR-9101 | 8 | _......_ | 3 | 75 |
| MIMAT0034626 | eca-miR-9081 | 2 | ......__ | 7 | 75 |
| MIMAT0033864 | atr-miR8580 | 6 | ......__ | 1 | 75 |
| MIMAT0033170 | ppc-miR-8316-3p | 8 | __...... | 3 | 75 |
| MIMAT0032767 | ath-miR8169 | 2 | ......__ | 7 | 75 |
| MIMAT0031535 | ppe-miR3627-3p | 7 | __...... | 2 | 75 |
| MIMAT0031237 | stu-miR8049-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031186 | stu-miR7992-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030356 | hhi-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0029442 | ipu-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0031148 | aja-miR-3618 | 6 | ......__ | 1 | 75 |
| MIMAT0028855 | mdo-miR-7386l-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026245 | ccr-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0027861 | mmu-miR-6979-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025776 | gga-miR-6674-3p | 8 | __...... | 3 | 75 |
| MIMAT0025660 | gga-miR-6576-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027308 | ppe-miR6279 | 1 | ......__ | 6 | 75 |
| MIMAT0024535 | cca-miR6103-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023815 | cgr-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0021816 | aca-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021172 | mtr-miR2586b | 7 | __...... | 2 | 75 |
| MIMAT0020587 | ssc-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0019970 | hsa-miR-4796-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019817 | hsa-miR-4711-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019639 | pma-miR-4605 | 3 | ......__ | 8 | 75 |
| MIMAT0018444 | hsa-miR-642b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017998 | hsa-miR-3618 | 6 | ......__ | 1 | 75 |
| MIMAT0016857 | hsa-miR-4305 | 3 | ......__ | 8 | 75 |
| MIMAT0016583 | cin-miR-4047-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016560 | cin-miR-4035-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016135 | ppy-miR-934 | 6 | ......__ | 1 | 75 |
| MIMAT0016071 | ppy-miR-632 | 6 | _......_ | 1 | 75 |
| MIMAT0015936 | ppy-miR-511 | 6 | _......_ | 1 | 75 |
| MIMAT0017675 | aly-miR158b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019197 | hsa-miR-3117-5p | 1 | _......_ | 6 | 75 |
| MIMAT0014567 | tgu-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015366 | zma-miR1432-3p | 7 | __...... | 2 | 75 |
| MIMAT0012999 | eca-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0012852 | rno-miR-667-3p | 2 | __...... | 7 | 75 |
| MIMAT0012837 | rno-miR-632 | 6 | _......_ | 1 | 75 |
| MIMAT0012517 | dsi-miR-2580 | 7 | _......_ | 2 | 75 |
| MIMAT0012167 | sme-miR-315-3p | 8 | ......__ | 3 | 75 |
| MIMAT0009923 | cfa-miR-632 | 6 | _......_ | 1 | 75 |
| MIMAT0009843 | cfa-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0009248 | bta-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0019128 | tca-miR-305-3p | 2 | __...... | 7 | 75 |
| MIMAT0019107 | tca-miR-33-3p | 8 | _......_ | 3 | 75 |
| MIMAT0008341 | ptr-miR-934 | 6 | ......__ | 1 | 75 |
| MIMAT0008289 | ptr-miR-632 | 6 | _......_ | 1 | 75 |
| MIMAT0008179 | ptr-miR-511 | 6 | _......_ | 1 | 75 |
| MIMAT0006536 | mml-miR-934-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006477 | mml-miR-632 | 6 | _......_ | 1 | 75 |
| MIMAT0006221 | mml-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022950 | osa-miR1432-3p | 8 | __...... | 3 | 75 |
| MIMAT0007267 | oan-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005586 | hsa-miR-1231 | 6 | _......_ | 1 | 75 |
| MIMAT0005164 | ppt-miR1048-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005153 | ppt-miR1042-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004977 | hsa-miR-934 | 6 | ......__ | 1 | 75 |
| MIMAT0004120 | mdo-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003614 | xtr-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0003734 | mmu-miR-667-3p | 2 | __...... | 7 | 75 |
| MIMAT0020924 | hsa-miR-642a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003302 | hsa-miR-632 | 6 | _......_ | 1 | 75 |
| MIMAT0002931 | tni-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0002930 | fru-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0002808 | hsa-miR-511-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002518 | ppa-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0002517 | mne-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0002516 | ppy-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0002515 | ggo-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0001599 | osa-miR440 | 7 | _......_ | 2 | 75 |
| MIMAT0001274 | dre-miR-187 | 8 | _......_ | 3 | 75 |
| MIMAT0001124 | gga-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000864 | rno-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000262 | hsa-miR-187-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000216 | mmu-miR-187-3p | 8 | _......_ | 3 | 75 |
