| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagatag | 7 | ||
| MIMAT0033784 | pxy-miR-8535-3p | 1 | ....... | 7 | 100 |
| MIMAT0028469 | mdo-miR-7251-3p | 8 | ....... | 2 | 100 |
| MIMAT0013651 | bmo-miR-2770-5p | 1 | ....... | 7 | 100 |
| MIMAT0011448 | cel-miR-2216-3p | 7 | ....... | 1 | 100 |
| MIMAT0003714 | ebv-miR-BART16 | 2 | ....... | 8 | 100 |
| MIMAT0037141 | ata-miR390-3p | 8 | _...... | 3 | 85 |
| MIMAT0037139 | ata-miR5200-3p | 3 | ......_ | 8 | 85 |
| MIMAT0037000 | tae-miR5200 | 3 | ......_ | 8 | 85 |
| MIMAT0035547 | bdi-miR5200b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035545 | bdi-miR5200a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035501 | bdi-miR9492 | 6 | ......_ | 1 | 85 |
| MIMAT0034157 | gra-miR7484f | 6 | ......_ | 1 | 85 |
| MIMAT0033790 | pxy-miR-8536b-3p | 7 | _...... | 2 | 85 |
| MIMAT0033699 | pxy-miR-8491 | 3 | ......_ | 8 | 85 |
| MIMAT0033564 | sma-miR-8430-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033189 | ppc-miR-8364m-3p | 1 | _...... | 6 | 85 |
| MIMAT0033060 | ppc-miR-8364q-3p | 3 | _...... | 8 | 85 |
| MIMAT0032944 | ppc-miR-312b-5p | 8 | _...... | 3 | 85 |
| MIMAT0030098 | bdi-miR5163b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029084 | gga-miR-7465-5p | 3 | _...... | 8 | 85 |
| MIMAT0028981 | oan-miR-7416-3p | 7 | _...... | 2 | 85 |
| MIMAT0028801 | mdo-miR-7374b-3p | 1 | _...... | 6 | 85 |
| MIMAT0026439 | sbi-miR5568e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026432 | sbi-miR6228-5p | 8 | _...... | 3 | 85 |
| MIMAT0022228 | mtr-miR5561-3p | 8 | _...... | 3 | 85 |
| MIMAT0022024 | aca-miR-5408a-5p | 6 | _...... | 1 | 85 |
| MIMAT0021412 | osa-miR5339 | 2 | _...... | 7 | 85 |
| MIMAT0020757 | bdi-miR5200c | 3 | ......_ | 8 | 85 |
| MIMAT0027043 | bdi-miR390a-3p | 8 | _...... | 3 | 85 |
| MIMAT0020064 | sko-miR-4844 | 3 | ......_ | 8 | 85 |
| MIMAT0019732 | hsa-miR-4662a-3p | 3 | _...... | 8 | 85 |
| MIMAT0018492 | csi-miR3951 | 1 | ......_ | 6 | 85 |
| MIMAT0018366 | far-miR1122 | 1 | ......_ | 6 | 85 |
| MIMAT0018350 | hsa-miR-3935 | 3 | ......_ | 8 | 85 |
| MIMAT0016574 | cin-miR-4042-3p | 1 | _...... | 6 | 85 |
| MIMAT0016019 | ppy-miR-577 | 1 | ......_ | 6 | 85 |
| MIMAT0017734 | aly-miR3449-3p | 1 | _...... | 6 | 85 |
| MIMAT0015603 | bmo-miR-3399 | 6 | ......_ | 1 | 85 |
| MIMAT0015566 | bmo-miR-3375-3p | 8 | _...... | 3 | 85 |
| MIMAT0015394 | bmo-miR-3214 | 2 | _...... | 7 | 85 |
| MIMAT0016942 | rlcv-miR-rL1-19-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015367 | zma-miR390b-3p | 8 | _...... | 3 | 85 |
| MIMAT0015333 | zma-miR390a-3p | 8 | _...... | 3 | 85 |
| MIMAT0012183 | bdi-miR1122 | 1 | ......_ | 6 | 85 |
| MIMAT0008251 | ptr-miR-577 | 1 | ......_ | 6 | 85 |
| MIMAT0006438 | mml-miR-577-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007229 | oan-miR-1411 | 2 | _...... | 7 | 85 |
| MIMAT0005357 | tae-miR1122a | 1 | ......_ | 6 | 85 |
| MIMAT0020874 | dme-miR-977-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004932 | mmu-miR-878-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017257 | mmu-miR-701-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003242 | hsa-miR-577 | 1 | ......_ | 6 | 85 |
| MIMAT0022888 | osa-miR390-3p | 8 | _...... | 3 | 85 |
| MIMAT0017188 | mghv-miR-M1-4-3p | 1 | _...... | 6 | 85 |
