| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagatgat | 8 | ||
| MIMAT0019186 | rlcv-miR-rL1-18-5p | 1 | ........ | 8 | 100 |
| MIMAT0034064 | gra-miR8691 | 1 | _....... | 7 | 87 |
| MIMAT0031516 | ppe-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0031273 | stu-miR827-3p | 2 | ......._ | 8 | 87 |
| MIMAT0029302 | mes-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0026028 | mdm-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0024725 | nta-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0023478 | hco-miR-5971 | 2 | ......._ | 8 | 87 |
| MIMAT0020279 | ssp-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0020703 | bdi-miR827-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020449 | tcc-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0018485 | csi-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0016804 | cin-miR-4186-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016735 | cin-miR-4138-5p | 1 | ......._ | 7 | 87 |
| MIMAT0017608 | aly-miR827-3p | 2 | ......._ | 8 | 87 |
| MIMAT0014343 | ghr-miR827c | 2 | ......._ | 8 | 87 |
| MIMAT0014342 | ghr-miR827b | 2 | ......._ | 8 | 87 |
| MIMAT0014341 | ghr-miR827a | 2 | ......._ | 8 | 87 |
| MIMAT0014031 | zma-miR827-3p | 2 | ......._ | 8 | 87 |
| MIMAT0009981 | osa-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0006003 | ptc-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0007036 | oan-miR-1371 | 1 | ......._ | 7 | 87 |
| MIMAT0004243 | ath-miR827 | 2 | ......._ | 8 | 87 |
| MIMAT0036395 | gma-miR9760 | 1 | .g...... | 8 | 87 |
| MIMAT0036083 | chi-miR-2320 | 1 | .c...... | 8 | 87 |
| MIMAT0030226 | bdi-miR7743-5p | 8 | ......c. | 1 | 87 |
| MIMAT0029632 | crm-miR-392 | 8 | .c...... | 1 | 87 |
| MIMAT0026372 | bma-miR-5873 | 1 | ......t. | 8 | 87 |
| MIMAT0025189 | ptc-miR6463 | 1 | .g...... | 8 | 87 |
| MIMAT0023489 | hco-miR-5979 | 1 | .g...... | 8 | 87 |
| MIMAT0022099 | aca-miR-5466 | 1 | .g...... | 8 | 87 |
| MIMAT0014851 | mmu-miR-3071-3p | 8 | .t...... | 1 | 87 |
| MIMAT0012341 | dps-miR-2542-3p | 1 | ......g. | 8 | 87 |
| MIMAT0011845 | bta-miR-2320-3p | 1 | .c...... | 8 | 87 |
| MIMAT0037154 | ata-miR9772b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0037106 | ata-miR9772a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036982 | tae-miR9772 | 3 | _......_ | 8 | 75 |
| MIMAT0036724 | oha-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036476 | tch-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036291 | chi-miR-708-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035964 | chi-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035956 | chi-miR-136-3p | 6 | __...... | 1 | 75 |
| MIMAT0035872 | bra-miR172c-5p | 8 | __...... | 3 | 75 |
| MIMAT0035793 | tae-miR9674a-5p | 8 | __...... | 3 | 75 |
| MIMAT0035658 | bra-miR9408-3p | 8 | _......_ | 3 | 75 |
| MIMAT0034940 | efu-miR-9286 | 8 | _......_ | 3 | 75 |
| MIMAT0034615 | eca-miR-9070 | 3 | _......_ | 8 | 75 |
| MIMAT0034492 | eca-miR-8958 | 2 | __...... | 7 | 75 |
| MIMAT0034167 | gra-miR167c | 3 | _......_ | 8 | 75 |
| MIMAT0033690 | sma-miR-8484-3p | 8 | __...... | 3 | 75 |
| MIMAT0033686 | sma-miR-8482-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032389 | ssa-miR-153a-2-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032366 | ssa-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031708 | bbe-miR-4891-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031549 | ppe-miR5225-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031236 | stu-miR5304-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030900 | stu-miR1886g-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032252 | rgl-miR7803b-5p | 2 | __...... | 7 | 75 |
| MIMAT0030184 | bdi-miR7726a-5p | 2 | __...... | 7 | 75 |
| MIMAT0030032 | oar-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0029942 | cbn-miR-7690 | 7 | __...... | 2 | 75 |
| MIMAT0029420 | ipu-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0031147 | aja-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0029113 | gga-miR-7479-3p | 2 | ......__ | 7 | 75 |
| MIMAT0029017 | oan-miR-7433-3p | 3 | __...... | 8 | 75 |
| MIMAT0028811 | mdo-miR-7377-3p | 6 | __...... | 1 | 75 |
| MIMAT0028577 | mdo-miR-7296-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028174 | dev-miR-D5-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026224 | ccr-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0025922 | mdm-miR167a | 8 | __...... | 3 | 75 |
| MIMAT0027837 | mmu-miR-6967-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027777 | mmu-miR-6938-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025728 | gga-miR-6632-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025689 | gga-miR-6595-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025231 | ptc-miR6430 | 2 | __...... | 7 | 75 |
| MIMAT0023772 | cgr-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0023713 | hsa-miR-6088 | 3 | _......_ | 8 | 75 |
| MIMAT0023563 | tca-miR-6011-5p | 2 | __...... | 7 | 75 |
| MIMAT0023506 | hco-miR-5990-5p | 7 | __...... | 2 | 75 |
| MIMAT0023362 | hco-miR-5908-5p | 1 | __...... | 6 | 75 |
| MIMAT0022668 | ola-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0022431 | ath-miR5658 | 3 | __...... | 8 | 75 |
| MIMAT0022141 | osa-miR5508 | 1 | ......__ | 6 | 75 |
| MIMAT0021770 | aca-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021385 | isc-miR-5314 | 3 | ......__ | 8 | 75 |
| MIMAT0020731 | bdi-miR5182 | 2 | __...... | 7 | 75 |
| MIMAT0020598 | ssc-miR-2320-3p | 2 | __...... | 7 | 75 |
| MIMAT0021070 | gma-miR5041-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020188 | dme-miR-4965-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020144 | cel-miR-4938 | 6 | __...... | 1 | 75 |
| MIMAT0020480 | bfl-miR-4891-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019951 | hsa-miR-1245b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019924 | hsa-miR-4770 | 3 | _......_ | 8 | 75 |
| MIMAT0019473 | pma-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018750 | tca-miR-309a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018110 | hsa-miR-3682-3p | 2 | __...... | 7 | 75 |
| MIMAT0016540 | cin-miR-4024-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016960 | rlcv-miR-rL1-34-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017739 | ath-miR774b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017699 | aly-miR774b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015401 | bmo-miR-3221 | 8 | _......_ | 3 | 75 |
| MIMAT0013879 | ssc-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013063 | eca-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0011454 | cel-miR-2209b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012158 | sme-miR-36c-5p | 2 | __...... | 7 | 75 |
| MIMAT0017351 | mmu-miR-1981-3p | 6 | ......__ | 1 | 75 |
| MIMAT0009233 | bta-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0008027 | ptr-miR-1322 | 1 | __...... | 6 | 75 |
| MIMAT0007993 | ptr-miR-1272 | 1 | __...... | 6 | 75 |
| MIMAT0012129 | ath-miR1886.2 | 3 | _......_ | 8 | 75 |
| MIMAT0007834 | osa-miR1877 | 1 | _......_ | 6 | 75 |
| MIMAT0006682 | cfa-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0006201 | mml-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007619 | gga-miR-1721 | 3 | _......_ | 8 | 75 |
| MIMAT0007616 | gga-miR-1719 | 3 | _......_ | 8 | 75 |
| MIMAT0007605 | gga-miR-1710 | 6 | _......_ | 1 | 75 |
| MIMAT0007144 | oan-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005953 | hsa-miR-1322 | 1 | __...... | 6 | 75 |
| MIMAT0005925 | hsa-miR-1272 | 1 | __...... | 6 | 75 |
| MIMAT0005242 | smo-miR1089 | 8 | __...... | 3 | 75 |
| MIMAT0004468 | mdv2-miR-M24-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004299 | cbr-miR-392 | 7 | __...... | 2 | 75 |
| MIMAT0004113 | mdo-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012094 | sme-miR-2c-5p | 7 | __...... | 2 | 75 |
| MIMAT0003686 | xtr-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0002261 | ppa-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0002260 | lla-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0002259 | ppy-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0002258 | ggo-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0002257 | ptr-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0001840 | dre-miR-143 | 3 | _......_ | 8 | 75 |
| MIMAT0001636 | hsa-miR-452-3p | 7 | _......_ | 2 | 75 |
| MIMAT0001322 | ath-miR414 | 6 | _......_ | 1 | 75 |
| MIMAT0000849 | rno-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004733 | rno-miR-136-3p | 7 | __...... | 2 | 75 |
| MIMAT0000768 | cel-miR-392-3p | 7 | __...... | 2 | 75 |
| MIMAT0004606 | hsa-miR-136-3p | 7 | __...... | 2 | 75 |
| MIMAT0000435 | hsa-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000247 | mmu-miR-143-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004532 | mmu-miR-136-3p | 6 | __...... | 1 | 75 |
