VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rlcv-miR-rl1-6-3p
uagcaccg

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`tagcaccg`	8
MIMAT0003435	rlcv-miR-rL1-6-3p	1	`........`	8	100
MIMAT0003390	ebv-miR-BART1-3p	1	`........`	8	100
MIMAT0037256	ata-miR9674b-5p	7	`......._`	1	87
MIMAT0037195	ata-miR9674c-3p	7	`......._`	1	87
MIMAT0036879	oha-miR-29b-3p	1	`......._`	7	87
MIMAT0036877	oha-miR-29a-3p	1	`......._`	7	87
MIMAT0036546	tch-miR-29c-3p	1	`......._`	7	87
MIMAT0036511	tch-miR-29a-3p	1	`......._`	7	87
MIMAT0036494	tch-miR-29b-3p	1	`......._`	7	87
MIMAT0036117	chi-miR-29c-3p	1	`......._`	7	87
MIMAT0036115	chi-miR-29b-3p	1	`......._`	7	87
MIMAT0036113	chi-miR-29a-3p	1	`......._`	7	87
MIMAT0035613	dvi-miR-998-3p	1	`......._`	7	87
MIMAT0035609	dvi-miR-995-3p	1	`......._`	7	87
MIMAT0035176	efu-miR-29a	2	`......._`	8	87
MIMAT0035175	efu-miR-29b	2	`......._`	8	87
MIMAT0034941	efu-miR-29c	2	`......._`	8	87
MIMAT0032887	ppc-miR-83-3p	1	`......._`	7	87
MIMAT0032591	ssa-miR-29c-3p	1	`......._`	7	87
MIMAT0032586	ssa-miR-29b-3p	1	`......._`	7	87
MIMAT0032584	ssa-miR-29a-3p	1	`......._`	7	87
MIMAT0031665	bbe-miR-29b-3p	1	`......._`	7	87
MIMAT0031663	bbe-miR-29a-3p	1	`......._`	7	87
MIMAT0030741	prd-miR-49-3p	1	`......._`	7	87
MIMAT0030054	oar-miR-29b	1	`......._`	7	87
MIMAT0032196	lva-miR-29b-3p	1	`......._`	7	87
MIMAT0032146	pmi-miR-29b-3p	1	`......._`	7	87
MIMAT0029746	cbn-miR-83	1	`......._`	7	87
MIMAT0031149	aja-miR-29c	1	`......._`	7	87
MIMAT0031135	aja-miR-29b	1	`......._`	7	87
MIMAT0026287	ccr-miR-29b	1	`......._`	7	87
MIMAT0026286	ccr-miR-29a	1	`......._`	7	87
MIMAT0025864	blv-miR-B4-3p	1	`......._`	7	87
MIMAT0025001	hme-miR-998	1	`......._`	7	87
MIMAT0024970	hme-miR-285	1	`......._`	7	87
MIMAT0024436	mse-miR-285	1	`......._`	7	87
MIMAT0024423	mse-miR-998	1	`......._`	7	87
MIMAT0024334	mml-miR-1250	8	`_.......`	2	87
MIMAT0024235	ggo-miR-1250	8	`_.......`	2	87
MIMAT0024084	ggo-miR-29c	1	`......._`	7	87
MIMAT0023888	cgr-miR-29c-3p	1	`......._`	7	87
MIMAT0023886	cgr-miR-29b-3p	1	`......._`	7	87
MIMAT0023884	cgr-miR-29a-3p	1	`......._`	7	87
MIMAT0023355	hco-miR-83	1	`......._`	7	87
MIMAT0022656	ola-miR-29c	1	`......._`	7	87
MIMAT0022569	ola-miR-29b	1	`......._`	7	87
MIMAT0022470	hsa-miR-5682	2	`......._`	8	87
MIMAT0021914	aca-miR-29b	1	`......._`	7	87
MIMAT0021912	aca-miR-29a-3p	1	`......._`	7	87
MIMAT0021476	asu-miR-83-3p	1	`......._`	7	87
MIMAT0020067	spu-miR-29b	1	`......._`	7	87
MIMAT0019421	pma-miR-29d-3p	1	`......._`	7	87
MIMAT0019419	pma-miR-29c	1	`......._`	7	87
MIMAT0019418	pma-miR-29b	1	`......._`	7	87
MIMAT0019417	pma-miR-29a-3p	1	`......._`	7	87
MIMAT0018401	ngi-miR-29b	1	`......._`	7	87
MIMAT0018853	tca-miR-998-3p	1	`......._`	7	87
MIMAT0018803	tca-miR-29-3p	1	`......._`	7	87
MIMAT0018629	tca-miR-995-3p	1	`......._`	7	87
MIMAT0016402	cin-miR-29-3p	1	`......._`	7	87
MIMAT0016175	ppy-miR-1250	8	`_.......`	2	87
MIMAT0015735	ppy-miR-29c	1	`......._`	7	87
MIMAT0015656	nvi-miR-29b	1	`......._`	7	87
MIMAT0014967	oar-miR-29a	1	`......._`	7	87
MIMAT0014849	mmu-miR-3070-2-3p	8	`......._`	2	87
MIMAT0014847	mmu-miR-3070-3p	8	`......._`	2	87
MIMAT0014747	api-miR-998	1	`......._`	7	87
MIMAT0014726	api-miR-29	1	`......._`	7	87
MIMAT0014601	tgu-miR-29b-3p	1	`......._`	7	87
MIMAT0014532	tgu-miR-29a-3p	1	`......._`	7	87
MIMAT0014445	cqu-miR-998	1	`......._`	7	87
MIMAT0014411	cqu-miR-285-3p	1	`......._`	7	87
MIMAT0014273	aae-miR-285	1	`......._`	7	87
MIMAT0014227	aae-miR-998	1	`......._`	7	87
MIMAT0013870	ssc-miR-29a	2	`......._`	8	87
MIMAT0012964	eca-miR-29c	1	`......._`	7	87
MIMAT0012941	eca-miR-29b	1	`......._`	7	87
MIMAT0012940	eca-miR-29a	1	`......._`	7	87
MIMAT0017369	rno-miR-667-5p	7	`_.......`	1	87
MIMAT0013603	bmo-miR-998	1	`......._`	7	87
MIMAT0012695	isc-miR-285	1	`......._`	7	87
MIMAT0012656	dpu-miR-285	1	`......._`	7	87
MIMAT0012454	dsi-miR-995-3p	1	`......._`	7	87
MIMAT0012272	dps-miR-995-3p	1	`......._`	7	87
MIMAT0011515	crm-miR-83	1	`......._`	7	87
MIMAT0009613	sko-miR-29b-3p	1	`......._`	7	87
MIMAT0009612	sko-miR-29a	1	`......._`	7	87
MIMAT0009565	lgi-miR-29	1	`......._`	7	87
MIMAT0009514	cte-miR-29b	1	`......._`	7	87
MIMAT0009513	cte-miR-29a	1	`......._`	7	87
MIMAT0009471	bfl-miR-29a-3p	1	`......._`	7	87
MIMAT0009154	bmo-miR-285	1	`......._`	7	87
MIMAT0009275	bta-miR-29d-3p	1	`......._`	7	87
MIMAT0009088	dya-miR-285	1	`......._`	7	87
MIMAT0008984	dwi-miR-285	1	`......._`	7	87
MIMAT0008969	dvi-miR-285-3p	1	`......._`	7	87
MIMAT0008888	dsi-miR-285	1	`......._`	7	87
MIMAT0008809	dse-miR-285	1	`......._`	7	87
MIMAT0008651	dmo-miR-285	1	`......._`	7	87
MIMAT0008581	dgr-miR-285	1	`......._`	7	87
MIMAT0008514	der-miR-285	1	`......._`	7	87
MIMAT0008419	dan-miR-285	1	`......._`	7	87
MIMAT0008082	ptr-miR-29c	1	`......._`	7	87
MIMAT0007976	ptr-miR-1250	8	`_.......`	2	87
MIMAT0006705	cfa-miR-29c	1	`......._`	7	87
MIMAT0006626	cfa-miR-29a	1	`......._`	7	87
MIMAT0006625	cfa-miR-29b	1	`......._`	7	87
MIMAT0006169	mml-miR-29c-3p	1	`......._`	7	87
MIMAT0006168	mml-miR-29b-3p	1	`......._`	7	87
MIMAT0006809	oan-miR-29b-3p	1	`......._`	7	87
MIMAT0006807	oan-miR-29a-3p	1	`......._`	7	87
MIMAT0005902	hsa-miR-1250-5p	8	`_.......`	2	87
MIMAT0005518	dme-miR-998-3p	1	`......._`	7	87
MIMAT0005514	dme-miR-995-3p	1	`......._`	7	87
MIMAT0004427	ame-miR-29b	1	`......._`	7	87
MIMAT0004164	mdo-miR-29a-3p	1	`......._`	7	87
MIMAT0004163	mdo-miR-29b-3p	1	`......._`	7	87
MIMAT0003978	sme-miR-746-3p	1	`......._`	7	87
MIMAT0003829	bta-miR-29c	1	`......._`	7	87
MIMAT0003828	bta-miR-29b	1	`......._`	7	87
MIMAT0003677	xtr-miR-29c-3p	1	`......._`	7	87
MIMAT0003656	xtr-miR-29a	1	`......._`	7	87
MIMAT0003573	xtr-miR-29b	1	`......._`	7	87
MIMAT0003572	xtr-miR-29d	1	`......._`	7	87
MIMAT0003518	bta-miR-29a	2	`......._`	8	87
MIMAT0017239	mmu-miR-667-5p	7	`_.......`	1	87
MIMAT0003056	tni-miR-29b	1	`......._`	7	87
MIMAT0003055	fru-miR-29b	1	`......._`	7	87
MIMAT0003054	tni-miR-29a	1	`......._`	7	87
MIMAT0003053	fru-miR-29a	1	`......._`	7	87
MIMAT0002441	mne-miR-29b	1	`......._`	7	87
MIMAT0002440	sla-miR-29b	1	`......._`	7	87
MIMAT0002439	ppa-miR-29b	1	`......._`	7	87
MIMAT0002438	age-miR-29b	1	`......._`	7	87
MIMAT0002437	lla-miR-29b	1	`......._`	7	87
MIMAT0002436	ggo-miR-29b	1	`......._`	7	87
MIMAT0002435	ptr-miR-29b	1	`......._`	7	87
MIMAT0002434	ppy-miR-29b	1	`......._`	7	87
MIMAT0002368	mne-miR-29a	2	`......._`	8	87
MIMAT0002367	lla-miR-29a	2	`......._`	8	87
MIMAT0002366	sla-miR-29a	2	`......._`	8	87
MIMAT0002365	mml-miR-29a-3p	2	`......._`	8	87
MIMAT0002364	ptr-miR-29a	2	`......._`	8	87
MIMAT0002363	ppy-miR-29a	2	`......._`	8	87
MIMAT0002362	ppa-miR-29a	2	`......._`	8	87
MIMAT0002361	age-miR-29a	2	`......._`	8	87
MIMAT0002360	ggo-miR-29a	2	`......._`	8	87
MIMAT0002166	ssc-miR-29c	1	`......._`	7	87
MIMAT0002137	ssc-miR-29b	1	`......._`	7	87
MIMAT0001802	dre-miR-29a	1	`......._`	7	87
MIMAT0001801	dre-miR-29b	1	`......._`	7	87
MIMAT0001295	cbr-miR-83	1	`......._`	7	87
MIMAT0001249	dps-miR-285	1	`......._`	7	87
MIMAT0001183	gga-miR-29c-3p	1	`......._`	7	87
MIMAT0001097	gga-miR-29b-3p	1	`......._`	7	87
MIMAT0001096	gga-miR-29a-3p	1	`......._`	7	87
MIMAT0000803	rno-miR-29c-3p	1	`......._`	7	87
MIMAT0000802	rno-miR-29a-3p	1	`......._`	7	87
MIMAT0000801	rno-miR-29b-3p	1	`......._`	7	87
MIMAT0000681	hsa-miR-29c-3p	1	`......._`	7	87
MIMAT0000536	mmu-miR-29c-3p	1	`......._`	7	87
MIMAT0000535	mmu-miR-29a-3p	1	`......._`	7	87
MIMAT0000356	dme-miR-285-3p	1	`......._`	7	87
MIMAT0000127	mmu-miR-29b-3p	1	`......._`	7	87
MIMAT0000100	hsa-miR-29b-3p	1	`......._`	7	87
MIMAT0000086	hsa-miR-29a-3p	1	`......._`	7	87
MIMAT0000056	cel-miR-83-3p	1	`......._`	7	87
MIMAT0034153	gra-miR8741	1	`......t.`	8	87
MIMAT0025100	mmu-miR-6357	1	`......t.`	8	87
MIMAT0025088	mmu-miR-6345	1	`......t.`	8	87
MIMAT0020611	mmu-miR-5104	8	`......a.`	1	87
MIMAT0018792	tca-miR-3860-5p	1	`......t.`	8	87
MIMAT0037148	ata-miR172b-5p	3	`_......_`	8	75
MIMAT0035447	sly-miR9471a-5p	8	`_......_`	3	75
MIMAT0035441	sly-miR9471b-5p	8	`_......_`	3	75
MIMAT0034952	efu-miR-9292	1	`_......_`	6	75
MIMAT0034930	efu-miR-9282	7	`_......_`	2	75
MIMAT0034679	eca-miR-9128	8	`_......_`	3	75
MIMAT0034658	eca-miR-3065	3	`_......_`	8	75
MIMAT0034614	eca-miR-9069	8	`__......`	3	75
MIMAT0033774	pxy-miR-8531	6	`__......`	1	75
MIMAT0032779	ath-miR8180	8	`__......`	3	75
MIMAT0032766	ath-miR8168	7	`_......_`	2	75
MIMAT0032736	ssa-miR-8157-5p	1	`......__`	6	75
MIMAT0031751	bma-miR-49	2	`_......_`	7	75
MIMAT0031647	bbe-miR-216-3p	8	`__......`	3	75
MIMAT0031286	stu-miR172b-5p	3	`_......_`	8	75
MIMAT0030442	bta-miR-7862	7	`_......_`	2	75
MIMAT0032195	lva-miR-29a-3p	2	`_......_`	7	75
MIMAT0032145	pmi-miR-29a-3p	2	`_......_`	7	75
MIMAT0029861	mmu-miR-7676-3p	8	`__......`	3	75
MIMAT0029843	mmu-miR-7668-3p	6	`__......`	1	75
MIMAT0029745	cbn-miR-49	2	`_......_`	7	75
MIMAT0029096	gga-miR-7471-5p	8	`__......`	3	75
MIMAT0028590	mdo-miR-7299-5p	8	`......__`	3	75
MIMAT0027833	mmu-miR-3547-3p	3	`_......_`	8	75
MIMAT0027819	mmu-miR-6959-3p	3	`__......`	8	75
MIMAT0027759	mmu-miR-6929-3p	8	`_......_`	3	75
MIMAT0027643	hsa-miR-6871-3p	2	`_......_`	7	75
MIMAT0025609	gga-miR-6551-5p	6	`__......`	1	75
MIMAT0025296	mja-miR-6489-5p	2	`__......`	7	75
MIMAT0022570	ola-miR-29a	1	`_......_`	6	75
MIMAT0022010	aca-miR-5400	2	`......__`	7	75
MIMAT0021656	gma-miR172g	3	`_......_`	8	75
MIMAT0021460	asu-miR-49-3p	2	`_......_`	7	75
MIMAT0027061	bdi-miR172a-5p	3	`_......_`	8	75
MIMAT0021104	osa-miR5154	1	`_......_`	6	75
MIMAT0021068	gma-miR169i-3p	7	`__......`	2	75
MIMAT0019881	hsa-miR-4746-3p	8	`__......`	3	75
MIMAT0019600	pma-miR-4568	1	`......__`	6	75
MIMAT0018179	hsa-miR-3907	7	`_......_`	2	75
MIMAT0018815	tca-miR-3865-3p	2	`......__`	7	75
MIMAT0018690	tca-miR-3830-5p	8	`__......`	3	75
MIMAT0018085	hsa-miR-3663-3p	3	`_......_`	8	75
MIMAT0018008	vvi-miR3623-3p	7	`_......_`	2	75
MIMAT0016415	cin-miR-367-5p	7	`......__`	2	75
MIMAT0017890	rno-miR-3590-3p	1	`......__`	6	75
MIMAT0017840	rno-miR-3065-3p	3	`_......_`	8	75
MIMAT0017802	rno-miR-3547	3	`_......_`	8	75
MIMAT0017529	aly-miR172e-5p	3	`_......_`	8	75
MIMAT0017523	aly-miR172b-5p	3	`_......_`	8	75
MIMAT0015378	hsa-miR-3065-3p	3	`_......_`	8	75
MIMAT0014936	mmu-miR-3102-3p	2	`_......_`	7	75
MIMAT0014837	mmu-miR-3065-3p	3	`_......_`	8	75
MIMAT0014490	tgu-miR-2980	2	`......__`	7	75
MIMAT0013243	eca-miR-764-5p	6	`_......_`	1	75
MIMAT0013174	eca-miR-770-5p	1	`_......_`	6	75
MIMAT0012854	rno-miR-764-5p	6	`_......_`	1	75
MIMAT0017366	rno-miR-295-3p	8	`......__`	3	75
MIMAT0012818	ptr-miR-764	6	`_......_`	1	75
MIMAT0012794	mml-miR-764	6	`_......_`	1	75
MIMAT0013601	bmo-miR-11-5p	1	`......__`	6	75
MIMAT0011508	crm-miR-49	2	`_......_`	7	75
MIMAT0011289	dre-miR-2185-5p	6	`__......`	1	75
MIMAT0010167	bra-miR172b-5p	3	`_......_`	8	75
MIMAT0009948	bta-miR-764	6	`_......_`	1	75
MIMAT0009937	cfa-miR-764	6	`_......_`	1	75
MIMAT0009656	spu-miR-29a	2	`_......_`	7	75
MIMAT0019150	bfl-miR-216-3p	8	`__......`	3	75
MIMAT0009472	bfl-miR-29b-3p	1	`_......_`	6	75
MIMAT0007639	gga-miR-1736-3p	1	`_......_`	6	75
MIMAT0005338	rno-miR-770-5p	1	`_......_`	6	75
MIMAT0005264	smo-miR1107	6	`_......_`	1	75
MIMAT0004464	mdv2-miR-M21-3p	2	`_......_`	7	75
MIMAT0003894	mmu-miR-764-5p	6	`_......_`	1	75
MIMAT0004822	mmu-miR-770-5p	1	`_......_`	6	75
MIMAT0003442	rlcv-miR-rL1-12-3p	8	`__......`	3	75
MIMAT0026618	hsa-miR-585-5p	2	`......__`	7	75
MIMAT0017223	rno-miR-374-3p	3	`......__`	8	75
MIMAT0015214	kshv-miR-K12-1-3p	3	`_......_`	8	75
MIMAT0022906	ptc-miR172h-5p	3	`_......_`	8	75
MIMAT0015158	zma-miR172c-5p	2	`_......_`	7	75
MIMAT0015157	zma-miR172b-5p	2	`_......_`	7	75
MIMAT0015156	zma-miR172d-5p	2	`_......_`	7	75
MIMAT0022885	osa-miR172d-5p	3	`_......_`	8	75
MIMAT0031918	ath-miR172e-5p	3	`_......_`	8	75
MIMAT0000474	cbr-miR-49	2	`_......_`	7	75
MIMAT0000204	ath-miR172b-5p	3	`_......_`	8	75
MIMAT0000020	cel-miR-49-3p	2	`_......_`	7	75