| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taggcgc | 7 | ||
| MIMAT0002186 | kshv-miR-K12-8-3p | 2 | ....... | 8 | 100 |
| MIMAT0037290 | ame-miR-9886 | 1 | ......_ | 6 | 85 |
| MIMAT0036424 | ggo-miR-524-3p | 3 | _...... | 8 | 85 |
| MIMAT0036413 | ggo-miR-525-3p | 3 | _...... | 8 | 85 |
| MIMAT0034928 | efu-miR-337 | 6 | ......_ | 1 | 85 |
| MIMAT0034673 | eca-miR-9123 | 7 | _...... | 2 | 85 |
| MIMAT0032874 | ppc-miR-8220-5p | 1 | _...... | 6 | 85 |
| MIMAT0032801 | cel-miR-8194-5p | 8 | _...... | 3 | 85 |
| MIMAT0029792 | mmu-miR-6546-5p | 1 | _...... | 6 | 85 |
| MIMAT0029792 | mmu-miR-6546-5p | 8 | _...... | 3 | 85 |
| MIMAT0029001 | oan-miR-7425-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028499 | mdo-miR-7265-3p | 2 | _...... | 7 | 85 |
| MIMAT0025853 | hsa-miR-6722-5p | 1 | _...... | 6 | 85 |
| MIMAT0025851 | hsa-miR-6720-3p | 7 | _...... | 2 | 85 |
| MIMAT0021562 | asu-miR-5352-5p | 2 | _...... | 7 | 85 |
| MIMAT0018873 | tca-miR-3887-3p | 8 | _...... | 3 | 85 |
| MIMAT0016010 | ppy-miR-566 | 8 | _...... | 3 | 85 |
| MIMAT0015983 | ppy-miR-525-3p | 3 | _...... | 8 | 85 |
| MIMAT0015981 | ppy-miR-524-3p | 3 | _...... | 8 | 85 |
| MIMAT0017573 | aly-miR399b-5p | 8 | _...... | 3 | 85 |
| MIMAT0015082 | hsa-miR-3197 | 3 | _...... | 8 | 85 |
| MIMAT0016956 | rlcv-miR-rL1-31-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032094 | dvi-miR-87-5p | 8 | _...... | 3 | 85 |
| MIMAT0008244 | ptr-miR-566 | 8 | _...... | 3 | 85 |
| MIMAT0008209 | ptr-miR-525 | 3 | _...... | 8 | 85 |
| MIMAT0008208 | ptr-miR-524 | 3 | _...... | 8 | 85 |
| MIMAT0026636 | hsa-miR-668-5p | 7 | _...... | 2 | 85 |
| MIMAT0003230 | hsa-miR-566 | 8 | _...... | 3 | 85 |
| MIMAT0002850 | hsa-miR-524-3p | 3 | _...... | 8 | 85 |
| MIMAT0002839 | hsa-miR-525-3p | 3 | _...... | 8 | 85 |
| MIMAT0020821 | dme-miR-87-5p | 8 | _...... | 3 | 85 |
| MIMAT0020337 | cel-miR-246-5p | 6 | ......_ | 1 | 85 |
