| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taggcgg | 7 | ||
| MIMAT0029001 | oan-miR-7425-3p | 1 | ....... | 7 | 100 |
| MIMAT0037290 | ame-miR-9886 | 1 | ......_ | 6 | 85 |
| MIMAT0037153 | ata-miR168-3p | 7 | _...... | 2 | 85 |
| MIMAT0036099 | chi-miR-25-5p | 1 | _...... | 6 | 85 |
| MIMAT0035837 | bra-miR168a-3p | 7 | _...... | 2 | 85 |
| MIMAT0035835 | bra-miR168c-3p | 7 | _...... | 2 | 85 |
| MIMAT0035833 | bra-miR168b-3p | 7 | _...... | 2 | 85 |
| MIMAT0035756 | bfv-miR-BF2-3p | 3 | _...... | 8 | 85 |
| MIMAT0034928 | efu-miR-337 | 6 | ......_ | 1 | 85 |
| MIMAT0034183 | gra-miR8754 | 8 | _...... | 3 | 85 |
| MIMAT0032562 | ssa-miR-25-3-5p | 1 | _...... | 6 | 85 |
| MIMAT0032560 | ssa-miR-25-5p | 1 | _...... | 6 | 85 |
| MIMAT0029902 | mmu-miR-7687-5p | 1 | _...... | 6 | 85 |
| MIMAT0031132 | sly-miR168b-3p | 7 | _...... | 2 | 85 |
| MIMAT0027661 | hsa-miR-6880-3p | 6 | _...... | 1 | 85 |
| MIMAT0024055 | ptr-miR-3937 | 3 | _...... | 8 | 85 |
| MIMAT0023869 | cgr-miR-25-5p | 1 | _...... | 6 | 85 |
| MIMAT0023712 | hsa-miR-6087 | 3 | _...... | 8 | 85 |
| MIMAT0023703 | hsa-miR-6078 | 6 | _...... | 1 | 85 |
| MIMAT0022362 | mmu-miR-5617-3p | 2 | _...... | 7 | 85 |
| MIMAT0022236 | mtr-miR168c-3p | 7 | _...... | 2 | 85 |
| MIMAT0021481 | asu-miR-87a-5p | 6 | _...... | 1 | 85 |
| MIMAT0027053 | bdi-miR168-3p | 7 | _...... | 2 | 85 |
| MIMAT0032116 | hsa-miR-4485-5p | 7 | _...... | 2 | 85 |
| MIMAT0018352 | hsa-miR-3937 | 3 | _...... | 8 | 85 |
| MIMAT0018868 | tca-miR-3885-5p | 2 | _...... | 7 | 85 |
| MIMAT0018552 | ame-miR-3775 | 2 | _...... | 7 | 85 |
| MIMAT0016610 | cin-miR-4061-5p | 1 | _...... | 6 | 85 |
| MIMAT0017482 | aly-miR168a-3p | 7 | _...... | 2 | 85 |
| MIMAT0016956 | rlcv-miR-rL1-31-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019192 | rlcv-miR-rL1-27-5p | 7 | _...... | 2 | 85 |
| MIMAT0013857 | bta-miR-2899 | 1 | _...... | 6 | 85 |
| MIMAT0011986 | bta-miR-2419-3p | 2 | _...... | 7 | 85 |
| MIMAT0008309 | ptr-miR-663a | 1 | _...... | 6 | 85 |
| MIMAT0006502 | mml-miR-663 | 1 | _...... | 6 | 85 |
| MIMAT0007567 | gga-miR-1680-3p | 2 | _...... | 7 | 85 |
| MIMAT0003326 | hsa-miR-663a | 1 | _...... | 6 | 85 |
| MIMAT0022897 | ptc-miR168b-3p | 7 | _...... | 2 | 85 |
| MIMAT0022896 | ptc-miR168a-3p | 7 | _...... | 2 | 85 |
| MIMAT0031946 | dre-miR-25-5p | 1 | _...... | 6 | 85 |
| MIMAT0015192 | zma-miR168b-3p | 7 | _...... | 2 | 85 |
| MIMAT0015191 | zma-miR168a-3p | 7 | _...... | 2 | 85 |
| MIMAT0004713 | rno-miR-25-5p | 1 | _...... | 6 | 85 |
| MIMAT0017049 | mmu-miR-25-5p | 1 | _...... | 6 | 85 |
| MIMAT0020337 | cel-miR-246-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031884 | ath-miR168a-3p | 7 | _...... | 2 | 85 |
| MIMAT0004498 | hsa-miR-25-5p | 1 | _...... | 6 | 85 |
