| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagggaac | 8 | ||
| MIMAT0015341 | zma-miR395i-5p | 8 | ........ | 1 | 100 |
| MIMAT0015164 | zma-miR395b-5p | 8 | ........ | 1 | 100 |
| MIMAT0037184 | ata-miR395f-5p | 7 | _....... | 1 | 87 |
| MIMAT0037164 | ata-miR395d-5p | 8 | _....... | 2 | 87 |
| MIMAT0037162 | ata-miR395a-5p | 7 | _....... | 1 | 87 |
| MIMAT0037150 | ata-miR395b-5p | 7 | _....... | 1 | 87 |
| MIMAT0037014 | ssc-miR-9796-3p | 2 | _....... | 8 | 87 |
| MIMAT0031493 | ppe-miR395o | 7 | _....... | 1 | 87 |
| MIMAT0031479 | ppe-miR395b-5p | 7 | _....... | 1 | 87 |
| MIMAT0031477 | ppe-miR395a-5p | 7 | _....... | 1 | 87 |
| MIMAT0030093 | bdi-miR395o-5p | 8 | ......._ | 2 | 87 |
| MIMAT0029905 | mmu-miR-1258-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028825 | mdo-miR-7384-3p | 1 | _....... | 7 | 87 |
| MIMAT0027667 | hsa-miR-6883-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027544 | hsa-miR-6822-5p | 2 | _....... | 8 | 87 |
| MIMAT0027400 | hsa-miR-6750-5p | 2 | _....... | 8 | 87 |
| MIMAT0027096 | bdi-miR395n-5p | 7 | _....... | 1 | 87 |
| MIMAT0027095 | bdi-miR395l-5p | 7 | _....... | 1 | 87 |
| MIMAT0027094 | bdi-miR395k-5p | 7 | _....... | 1 | 87 |
| MIMAT0027092 | bdi-miR395h-5p | 7 | _....... | 1 | 87 |
| MIMAT0027090 | bdi-miR395f-5p | 7 | _....... | 1 | 87 |
| MIMAT0027074 | bdi-miR395c-5p | 7 | _....... | 1 | 87 |
| MIMAT0018495 | csi-miR482c | 7 | ......._ | 1 | 87 |
| MIMAT0022736 | hsa-miR-642b-5p | 8 | _....... | 2 | 87 |
| MIMAT0017667 | aly-miR395h-5p | 7 | _....... | 1 | 87 |
| MIMAT0017587 | aly-miR408-5p | 2 | _....... | 8 | 87 |
| MIMAT0017555 | aly-miR395f-5p | 7 | _....... | 1 | 87 |
| MIMAT0017549 | aly-miR395c-5p | 7 | _....... | 1 | 87 |
| MIMAT0017547 | aly-miR395b-5p | 7 | _....... | 1 | 87 |
| MIMAT0015348 | zma-miR395p-5p | 7 | _....... | 1 | 87 |
| MIMAT0015342 | zma-miR395j-5p | 7 | _....... | 1 | 87 |
| MIMAT0015340 | zma-miR395h-5p | 7 | _....... | 1 | 87 |
| MIMAT0015337 | zma-miR395e-5p | 7 | _....... | 1 | 87 |
| MIMAT0032053 | dvi-miR-6-2-5p | 1 | _....... | 7 | 87 |
| MIMAT0015283 | dsi-miR-6-5p | 1 | _....... | 7 | 87 |
| MIMAT0007226 | oan-miR-1409-5p | 2 | _....... | 8 | 87 |
| MIMAT0015165 | zma-miR395c-5p | 7 | _....... | 1 | 87 |
| MIMAT0020789 | dme-miR-6-3-5p | 1 | _....... | 7 | 87 |
| MIMAT0020788 | dme-miR-6-2-5p | 1 | _....... | 7 | 87 |
| MIMAT0034666 | eca-miR-9117 | 1 | ......t. | 8 | 87 |
| MIMAT0022986 | mmu-miR-3572-5p | 1 | .g...... | 8 | 87 |
| MIMAT0014919 | mmu-miR-3100-5p | 1 | .t...... | 8 | 87 |
| MIMAT0017380 | ssc-miR-450b-3p | 1 | .t...... | 8 | 87 |
| MIMAT0013221 | eca-miR-450b-3p | 1 | .t...... | 8 | 87 |
| MIMAT0036812 | oha-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0036705 | oha-miR-135-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036057 | chi-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0036050 | chi-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035762 | tae-miR9655-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035722 | rno-miR-1247-3p | 2 | __...... | 7 | 75 |
| MIMAT0035542 | hsa-miR-9500 | 2 | _......_ | 7 | 75 |
| MIMAT0034970 | efu-miR-135 | 3 | ......__ | 8 | 75 |
| MIMAT0034964 | efu-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0034791 | efu-miR-9204 | 6 | _......_ | 1 | 75 |
| MIMAT0034591 | eca-miR-9047 | 7 | __...... | 2 | 75 |
| MIMAT0034154 | gra-miR8771c | 1 | ......__ | 6 | 75 |
| MIMAT0034078 | gra-miR8697 | 1 | _......_ | 6 | 75 |
| MIMAT0033750 | pxy-miR-929 | 7 | ......__ | 2 | 75 |
| MIMAT0033544 | sma-miR-8420-5p | 2 | __...... | 7 | 75 |
| MIMAT0033514 | sma-miR-36b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033111 | ppc-miR-8297-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032650 | ssa-miR-459-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032488 | ssa-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032343 | ssa-miR-135a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031696 | bbe-miR-4873-5p | 7 | __...... | 2 | 75 |
| MIMAT0030986 | hsa-miR-8059 | 2 | __...... | 7 | 75 |
| MIMAT0031199 | stu-miR8019-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030405 | ptc-miR7832 | 8 | __...... | 3 | 75 |
| MIMAT0030315 | bdi-miR7780-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030180 | bdi-miR7725b-5p.1 | 3 | ......__ | 8 | 75 |
| MIMAT0029847 | mmu-miR-7670-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029836 | mmu-miR-7665-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029630 | crm-miR-7611 | 3 | __...... | 8 | 75 |
| MIMAT0029459 | ipu-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0029327 | lja-miR408 | 2 | _......_ | 7 | 75 |
| MIMAT0029297 | mes-miR482 | 8 | _......_ | 3 | 75 |
| MIMAT0029065 | gga-miR-7455-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028748 | mdo-miR-7366-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028662 | mdo-miR-505-5p | 3 | __...... | 8 | 75 |
| MIMAT0028359 | mml-miR-1247-3p | 2 | __...... | 7 | 75 |
| MIMAT0028317 | mml-miR-3938-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028312 | mml-miR-6827-5p | 3 | __...... | 8 | 75 |
| MIMAT0028247 | mml-miR-3059-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026305 | ccr-miR-459-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026033 | mdm-miR408d | 3 | _......_ | 8 | 75 |
| MIMAT0026032 | mdm-miR408c | 3 | _......_ | 8 | 75 |
| MIMAT0026031 | mdm-miR408b | 3 | _......_ | 8 | 75 |
| MIMAT0027986 | mmu-miR-7041-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027854 | mmu-miR-6976-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027414 | hsa-miR-6757-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025768 | gga-miR-6667-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025725 | gga-miR-6629-5p | 3 | __...... | 8 | 75 |
| MIMAT0025692 | gga-miR-6597-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025651 | gga-miR-6572-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025562 | bta-miR-6528 | 3 | _......_ | 8 | 75 |
| MIMAT0025550 | bta-miR-1247-3p | 2 | __...... | 7 | 75 |
| MIMAT0025334 | pde-miR482b | 8 | _......_ | 3 | 75 |
| MIMAT0024590 | bta-miR-6120-5p | 8 | __...... | 3 | 75 |
| MIMAT0024498 | mse-miR-929a | 7 | ......__ | 2 | 75 |
| MIMAT0024391 | ppy-miR-3938 | 8 | _......_ | 3 | 75 |
| MIMAT0023844 | cgr-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0023166 | gma-miR5769 | 3 | _......_ | 8 | 75 |
| MIMAT0023155 | mtr-miR5741e | 1 | ......__ | 6 | 75 |
| MIMAT0023147 | mtr-miR5741d | 1 | ......__ | 6 | 75 |
| MIMAT0023139 | mtr-miR5741c | 1 | ......__ | 6 | 75 |
| MIMAT0023123 | mtr-miR5741b | 1 | ......__ | 6 | 75 |
| MIMAT0023118 | mtr-miR5741a | 1 | ......__ | 6 | 75 |
| MIMAT0022795 | sha-miR-1546 | 2 | ......__ | 7 | 75 |
| MIMAT0022589 | ola-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0022283 | hsa-miR-5584-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022237 | mtr-miR408-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021853 | aca-miR-204a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021672 | gma-miR482d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021642 | gma-miR159f-5p | 8 | __...... | 3 | 75 |
| MIMAT0021630 | gma-miR408b-5p | 3 | __...... | 8 | 75 |
| MIMAT0021128 | hsa-miR-5196-5p | 1 | _......_ | 6 | 75 |
| MIMAT0021101 | osa-miR5152-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021034 | hsa-miR-5006-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020183 | dme-miR-4962-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020483 | bfl-miR-4893 | 8 | ......__ | 3 | 75 |
| MIMAT0020452 | bfl-miR-4873 | 7 | __...... | 2 | 75 |
| MIMAT0019895 | hsa-miR-4755-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019882 | hsa-miR-4747-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019745 | hsa-miR-4668-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019515 | pma-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018998 | hsa-miR-4471 | 2 | __...... | 7 | 75 |
| MIMAT0019233 | hsa-miR-4446-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018480 | csi-miR482a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018353 | hsa-miR-3938 | 8 | _......_ | 3 | 75 |
| MIMAT0020952 | gma-miR482b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018157 | pab-miR482b | 8 | _......_ | 3 | 75 |
| MIMAT0018156 | pab-miR482a | 8 | _......_ | 3 | 75 |
| MIMAT0018143 | pab-miR3710 | 2 | __...... | 7 | 75 |
| MIMAT0018042 | vvi-miR3633b-3p | 6 | __...... | 1 | 75 |
| MIMAT0016676 | cin-miR-4095-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016484 | cin-miR-4006g-5p | 1 | __...... | 6 | 75 |
| MIMAT0016464 | cin-miR-4005a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016354 | gso-miR482b | 8 | _......_ | 3 | 75 |
| MIMAT0016353 | gso-miR482a | 8 | _......_ | 3 | 75 |
| MIMAT0016328 | ahy-miR408-5p | 3 | __...... | 8 | 75 |
| MIMAT0019213 | hsa-miR-3162-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015036 | hsa-miR-3162-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014570 | tgu-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0014643 | tgu-miR-135a-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013112 | eca-miR-204b | 6 | _......_ | 1 | 75 |
| MIMAT0012901 | eca-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0013728 | bmo-miR-2818 | 3 | _......_ | 8 | 75 |
| MIMAT0012460 | dsi-miR-929-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012268 | dps-miR-929-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011964 | bta-miR-2406 | 2 | _......_ | 7 | 75 |
| MIMAT0010101 | aga-miR-929 | 7 | ......__ | 2 | 75 |
| MIMAT0010071 | osa-miR2103 | 7 | _......_ | 2 | 75 |
| MIMAT0010025 | ppt-miR1023e-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009867 | cfa-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0015289 | bmo-miR-929-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009263 | bta-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0019133 | tca-miR-929-3p | 7 | ......__ | 2 | 75 |
| MIMAT0008071 | ptr-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0008011 | ptr-miR-1292 | 2 | __...... | 7 | 75 |
| MIMAT0006628 | cfa-miR-135a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006598 | cfa-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0006235 | mml-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007689 | gga-miR-1778 | 2 | _......_ | 7 | 75 |
| MIMAT0020934 | gma-miR159b-5p | 8 | __...... | 3 | 75 |
| MIMAT0006014 | pta-miR482c | 8 | _......_ | 3 | 75 |
| MIMAT0006841 | oan-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0006832 | oan-miR-1337 | 2 | ......__ | 7 | 75 |
| MIMAT0005943 | hsa-miR-1292-5p | 2 | __...... | 7 | 75 |
| MIMAT0017334 | rno-miR-146b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005107 | ppt-miR1023c-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005511 | dme-miR-929-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005003 | pta-miR482b | 8 | _......_ | 3 | 75 |
| MIMAT0005002 | pta-miR482a | 8 | _......_ | 3 | 75 |
| MIMAT0004338 | bta-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0004127 | mdo-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0003696 | xtr-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0014801 | mmu-miR-1247-3p | 2 | __...... | 7 | 75 |
| MIMAT0003368 | gga-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0003102 | tni-miR-204a | 6 | _......_ | 1 | 75 |
| MIMAT0003101 | fru-miR-204a | 6 | _......_ | 1 | 75 |
| MIMAT0002935 | tni-miR-204b | 6 | _......_ | 1 | 75 |
| MIMAT0002549 | mne-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0002548 | ppy-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0002547 | mml-miR-211 | 6 | _......_ | 1 | 75 |
| MIMAT0002540 | ppa-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002539 | mne-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002538 | sla-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002537 | ppy-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002536 | ggo-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002535 | ptr-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002164 | ssc-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0002060 | ptc-miR472a | 8 | _......_ | 3 | 75 |
| MIMAT0022913 | ptc-miR408-5p | 3 | __...... | 8 | 75 |
| MIMAT0003408 | dre-miR-459-3p | 2 | _......_ | 7 | 75 |
| MIMAT0001279 | dre-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0001156 | gga-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0031915 | ath-miR408-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000882 | rno-miR-211-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000877 | rno-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004732 | rno-miR-135a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017064 | mmu-miR-135a-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000668 | mmu-miR-211-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004595 | hsa-miR-135a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000268 | hsa-miR-211-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000265 | hsa-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000237 | mmu-miR-204-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004531 | mmu-miR-135a-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020787 | dme-miR-6-1-5p | 1 | _......_ | 6 | 75 |
