| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taggggtg | 8 | ||
| MIMAT0027464 | hsa-miR-6782-5p | 1 | ........ | 8 | 100 |
| MIMAT0036157 | chi-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0032245 | rgl-miR7804-5p | 1 | _....... | 7 | 87 |
| MIMAT0028088 | mmu-miR-7091-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027858 | mmu-miR-6978-5p | 2 | _....... | 8 | 87 |
| MIMAT0027394 | hsa-miR-6747-5p | 1 | _....... | 7 | 87 |
| MIMAT0023922 | cgr-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0021126 | hsa-miR-5195-5p | 8 | ......._ | 2 | 87 |
| MIMAT0016049 | ppy-miR-608 | 1 | _....... | 7 | 87 |
| MIMAT0015844 | ppy-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0013136 | eca-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0032035 | cel-miR-1823-5p | 7 | ......._ | 1 | 87 |
| MIMAT0006282 | mml-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0005173 | ppt-miR1055 | 2 | ......._ | 8 | 87 |
| MIMAT0003276 | hsa-miR-608 | 1 | _....... | 7 | 87 |
| MIMAT0004694 | hsa-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0004653 | mmu-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0004652 | rno-miR-342-5p | 1 | _....... | 7 | 87 |
| MIMAT0032780 | ath-miR8181 | 1 | .g...... | 8 | 87 |
| MIMAT0031773 | hbv-miR-B22-3p | 1 | ......a. | 8 | 87 |
| MIMAT0028117 | hsa-miR-7110-5p | 1 | .g...... | 8 | 87 |
| MIMAT0027916 | mmu-miR-7006-5p | 1 | .g...... | 8 | 87 |
| MIMAT0027828 | mmu-miR-6964-5p | 1 | .t...... | 8 | 87 |
| MIMAT0027586 | hsa-miR-6842-5p | 1 | .g...... | 8 | 87 |
| MIMAT0027538 | hsa-miR-6819-5p | 1 | .t...... | 8 | 87 |
| MIMAT0027375 | hsa-miR-6737-5p | 1 | .t...... | 8 | 87 |
| MIMAT0025688 | gga-miR-6594-5p | 1 | .g...... | 8 | 87 |
| MIMAT0018904 | tca-miR-3900-5p | 1 | .g...... | 8 | 87 |
| MIMAT0018658 | tca-miR-3817-5p | 1 | .c...... | 8 | 87 |
| MIMAT0012002 | bta-miR-2431-3p | 8 | .g...... | 1 | 87 |
| MIMAT0011803 | bta-miR-2295 | 1 | .c...... | 8 | 87 |
| MIMAT0036814 | oha-miR-204-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035381 | nve-miR-2041b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0034824 | efu-miR-9223i | 8 | __...... | 3 | 75 |
| MIMAT0030894 | stu-miR8004 | 1 | _......_ | 6 | 75 |
| MIMAT0030544 | prd-miR-7887-5p | 1 | __...... | 6 | 75 |
| MIMAT0029813 | mmu-miR-7653-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028722 | mdo-miR-7355-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028687 | mdo-miR-7339-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028656 | mdo-miR-7327-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027945 | mmu-miR-7020-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027878 | mmu-miR-6988-5p | 1 | __...... | 6 | 75 |
| MIMAT0027786 | mmu-miR-6943-5p | 2 | __...... | 7 | 75 |
| MIMAT0027762 | mmu-miR-6931-5p | 2 | __...... | 7 | 75 |
| MIMAT0027593 | hsa-miR-6846-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027548 | hsa-miR-6824-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027524 | hsa-miR-6812-5p | 3 | __...... | 8 | 75 |
| MIMAT0027510 | hsa-miR-6805-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027505 | hsa-miR-6802-3p | 8 | __...... | 3 | 75 |
| MIMAT0027503 | hsa-miR-6801-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027491 | hsa-miR-6795-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027478 | hsa-miR-6789-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027466 | hsa-miR-6783-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027404 | hsa-miR-6752-5p | 3 | __...... | 8 | 75 |
| MIMAT0027377 | hsa-miR-6738-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027365 | hsa-miR-6732-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025598 | gga-miR-6547-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025571 | bta-miR-6535 | 1 | ......__ | 6 | 75 |
| MIMAT0024152 | ggo-miR-4488 | 1 | ......__ | 6 | 75 |
| MIMAT0023410 | hco-miR-5890f-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023393 | hco-miR-5890d | 8 | _......_ | 3 | 75 |
| MIMAT0023371 | hco-miR-5890b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023325 | hco-miR-5890a | 7 | _......_ | 2 | 75 |
| MIMAT0021308 | mtr-miR5273 | 1 | ......__ | 6 | 75 |
| MIMAT0021259 | mtr-miR5259 | 3 | _......_ | 8 | 75 |
| MIMAT0021125 | hsa-miR-5194 | 3 | _......_ | 8 | 75 |
| MIMAT0021096 | osa-miR5148c | 3 | _......_ | 8 | 75 |
| MIMAT0021095 | osa-miR5148b | 3 | _......_ | 8 | 75 |
| MIMAT0021094 | osa-miR5148a | 3 | _......_ | 8 | 75 |
| MIMAT0019777 | hsa-miR-4688 | 1 | ......__ | 6 | 75 |
| MIMAT0019737 | hsa-miR-4664-5p | 2 | __...... | 7 | 75 |
| MIMAT0019715 | hsa-miR-4651 | 2 | __...... | 7 | 75 |
| MIMAT0019700 | hsa-miR-4640-3p | 6 | __...... | 1 | 75 |
| MIMAT0019654 | pma-miR-4620 | 1 | ......__ | 6 | 75 |
| MIMAT0019653 | pma-miR-4619 | 6 | __...... | 1 | 75 |
| MIMAT0019239 | oar-miR-665-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019017 | hsa-miR-4483 | 1 | __...... | 6 | 75 |
| MIMAT0018351 | hsa-miR-3936 | 3 | _......_ | 8 | 75 |
| MIMAT0018884 | tca-miR-3892-5p | 7 | _......_ | 2 | 75 |
| MIMAT0018712 | tca-miR-2796-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016910 | hsa-miR-4278 | 2 | ......__ | 7 | 75 |
| MIMAT0017870 | rno-miR-409b | 1 | _......_ | 6 | 75 |
| MIMAT0014939 | mmu-miR-3104-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014907 | mmu-miR-3093-5p | 8 | __...... | 3 | 75 |
| MIMAT0014704 | hsv2-miR-H22 | 1 | _......_ | 6 | 75 |
| MIMAT0014351 | hsv2-miR-H7-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013696 | bmo-miR-2796-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012595 | hsv1-miR-H7-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012471 | dsi-miR-965-5p | 1 | __...... | 6 | 75 |
| MIMAT0012012 | bta-miR-2438 | 2 | __...... | 7 | 75 |
| MIMAT0011817 | bta-miR-2305 | 3 | __...... | 8 | 75 |
| MIMAT0007890 | hsa-miR-1914-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007668 | gga-miR-1761 | 2 | _......_ | 7 | 75 |
| MIMAT0007601 | gga-miR-1708 | 2 | __...... | 7 | 75 |
| MIMAT0006814 | oan-miR-1331 | 2 | __...... | 7 | 75 |
| MIMAT0005540 | mcmv-miR-m21-1 | 2 | ......__ | 7 | 75 |
| MIMAT0005434 | cre-miR1167 | 1 | __...... | 6 | 75 |
| MIMAT0005394 | cre-miR1151a-3p | 3 | __...... | 8 | 75 |
| MIMAT0005267 | smo-miR1110 | 3 | ......__ | 8 | 75 |
| MIMAT0005236 | smo-miR1085-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015220 | hsv1-miR-H1-3p | 8 | __...... | 3 | 75 |
