| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tatctttt | 8 | ||
| MIMAT0027327 | ppe-miR6292 | 1 | ........ | 8 | 100 |
| MIMAT0005546 | mcmv-miR-M44-1 | 1 | ........ | 8 | 100 |
| MIMAT0003428 | rlcv-miR-rL1-2-3p | 1 | ........ | 8 | 100 |
| MIMAT0000997 | ebv-miR-BHRF1-2-3p | 1 | ........ | 8 | 100 |
| MIMAT0035470 | sly-miR9476-3p | 8 | _....... | 2 | 87 |
| MIMAT0030305 | bdi-miR7776-3p.1 | 7 | ......._ | 1 | 87 |
| MIMAT0028624 | mdo-miR-7312-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028597 | mdo-miR-7302-3p | 1 | ......._ | 7 | 87 |
| MIMAT0028380 | mml-miR-7207-5p | 1 | _....... | 7 | 87 |
| MIMAT0020504 | dme-miR-4911-3p | 1 | _....... | 7 | 87 |
| MIMAT0019732 | hsa-miR-4662a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0016656 | cin-miR-4083-3p | 1 | ......._ | 7 | 87 |
| MIMAT0017683 | aly-miR773b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0014142 | ath-miR2938 | 2 | _....... | 8 | 87 |
| MIMAT0012869 | hvt-miR-H15-3p | 8 | ......._ | 2 | 87 |
| MIMAT0013737 | bmo-miR-2826 | 7 | _....... | 1 | 87 |
| MIMAT0012616 | bmo-miR-2738 | 1 | _....... | 7 | 87 |
| MIMAT0012520 | dsi-miR-2582a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0012152 | sme-miR-2161-5p | 2 | ......._ | 8 | 87 |
| MIMAT0020348 | cel-miR-787-5p | 7 | ......._ | 1 | 87 |
| MIMAT0034159 | gra-miR8742b | 1 | ......a. | 8 | 87 |
| MIMAT0034158 | gra-miR8742a | 1 | ......a. | 8 | 87 |
| MIMAT0033151 | ppc-miR-8310-3p | 1 | ......c. | 8 | 87 |
| MIMAT0033052 | ppc-miR-8276-3p | 8 | .t...... | 1 | 87 |
| MIMAT0024978 | hme-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0024434 | mse-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0022313 | cel-miR-5595-5p | 1 | .c...... | 8 | 87 |
| MIMAT0022251 | sbi-miR5570 | 8 | .g...... | 1 | 87 |
| MIMAT0020208 | dme-miR-4977-5p | 1 | .t...... | 8 | 87 |
| MIMAT0020129 | cel-miR-4923a | 8 | .c...... | 1 | 87 |
| MIMAT0018716 | tca-miR-316-5p | 1 | .g...... | 8 | 87 |
| MIMAT0015455 | bmo-miR-3270 | 1 | .g...... | 8 | 87 |
| MIMAT0014731 | api-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0014442 | cqu-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0014317 | aae-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0013597 | bmo-miR-316-5p | 1 | .g...... | 8 | 87 |
| MIMAT0010122 | ame-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0009080 | dya-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0009000 | dwi-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008945 | dvi-miR-316-5p | 1 | .g...... | 8 | 87 |
| MIMAT0008869 | dsi-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008818 | dse-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008764 | dpe-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008627 | dmo-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008591 | dgr-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008496 | der-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0008449 | dan-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0006370 | mml-miR-511-5p | 1 | .g...... | 8 | 87 |
| MIMAT0001262 | dps-miR-316 | 1 | .g...... | 8 | 87 |
| MIMAT0000408 | dme-miR-316-5p | 1 | .g...... | 8 | 87 |
| MIMAT0037051 | ssc-miR-9833-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036985 | tae-miR9774 | 7 | ......__ | 2 | 75 |
| MIMAT0036691 | oha-miR-130c-5p | 3 | __...... | 8 | 75 |
| MIMAT0036344 | gma-miR4348b | 1 | __...... | 6 | 75 |
| MIMAT0035943 | chi-miR-130a-5p | 3 | __...... | 8 | 75 |
| MIMAT0035629 | dvi-miR-9544a-3p | 7 | __...... | 2 | 75 |
| MIMAT0035324 | gsa-miR-184c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0034454 | eca-miR-8926 | 8 | _......_ | 3 | 75 |
| MIMAT0034251 | gra-miR7492o | 8 | _......_ | 3 | 75 |
| MIMAT0034045 | gra-miR8673 | 6 | ......__ | 1 | 75 |
| MIMAT0033827 | atr-miR8556 | 7 | __...... | 2 | 75 |
| MIMAT0033764 | pxy-miR-8523 | 7 | _......_ | 2 | 75 |
| MIMAT0032389 | ssa-miR-153a-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032327 | ssa-miR-130d-1-5p | 3 | __...... | 8 | 75 |
| MIMAT0031831 | cpa-miR8138 | 7 | _......_ | 2 | 75 |
| MIMAT0030916 | stu-miR8019-3p | 6 | __...... | 1 | 75 |
| MIMAT0030841 | prd-miR-7969-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030152 | bdi-miR7715-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030106 | bdi-miR5174d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028632 | mdo-miR-7316-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028523 | mdo-miR-7274-3p | 3 | __...... | 8 | 75 |
| MIMAT0027923 | mmu-miR-7009-3p | 1 | __...... | 6 | 75 |
| MIMAT0027837 | mmu-miR-6967-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023754 | cgr-miR-130a-5p | 3 | __...... | 8 | 75 |
| MIMAT0023127 | mtr-miR5747 | 6 | __...... | 1 | 75 |
| MIMAT0022120 | osa-miR5487 | 6 | _......_ | 1 | 75 |
| MIMAT0022011 | aca-miR-5401 | 2 | ......__ | 7 | 75 |
| MIMAT0021739 | aca-miR-130a-1-5p | 3 | __...... | 8 | 75 |
| MIMAT0021686 | sbi-miR5388 | 1 | _......_ | 6 | 75 |
| MIMAT0021607 | gma-miR5370 | 8 | _......_ | 3 | 75 |
| MIMAT0021072 | gma-miR5042-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019991 | cel-miR-4808-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019736 | hsa-miR-4662b | 6 | _......_ | 1 | 75 |
| MIMAT0018911 | tca-miR-3904-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016839 | cin-miR-4217-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016752 | cin-miR-4149-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016639 | cin-miR-4075-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016965 | cin-miR-4000b-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0017902 | rno-miR-741-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017790 | esi-miR3468-3p | 2 | __...... | 7 | 75 |
| MIMAT0017640 | aly-miR852-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015464 | bmo-miR-3279 | 1 | __...... | 6 | 75 |
| MIMAT0015394 | bmo-miR-3214 | 6 | ......__ | 1 | 75 |
| MIMAT0015030 | hsa-miR-3156-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014347 | ghr-miR2949c | 1 | __...... | 6 | 75 |
| MIMAT0014346 | ghr-miR2949b | 1 | __...... | 6 | 75 |
| MIMAT0013849 | bta-miR-2891 | 1 | _......_ | 6 | 75 |
| MIMAT0013683 | bmo-miR-2787-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013631 | bmo-miR-2759 | 8 | _......_ | 3 | 75 |
| MIMAT0013573 | cte-miR-2706 | 7 | ......__ | 2 | 75 |
| MIMAT0011993 | bta-miR-2424 | 3 | _......_ | 8 | 75 |
| MIMAT0011434 | cel-miR-2209c-3p | 6 | __...... | 1 | 75 |
| MIMAT0011179 | osa-miR2120 | 6 | _......_ | 1 | 75 |
| MIMAT0007785 | osa-miR1428e-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007783 | osa-miR1428d | 7 | ......__ | 2 | 75 |
| MIMAT0007782 | osa-miR1428c | 7 | ......__ | 2 | 75 |
| MIMAT0007781 | osa-miR1428b | 7 | ......__ | 2 | 75 |
| MIMAT0007698 | gga-miR-1786 | 3 | __...... | 8 | 75 |
| MIMAT0007616 | gga-miR-1719 | 6 | _......_ | 1 | 75 |
| MIMAT0007375 | gma-miR1516a-3p | 7 | __...... | 2 | 75 |
| MIMAT0007280 | osa-miR1428a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004275 | ath-miR852 | 6 | ......__ | 1 | 75 |
| MIMAT0026664 | mdo-miR-130a-5p | 3 | __...... | 8 | 75 |
| MIMAT0026623 | hsa-miR-627-3p | 1 | __...... | 6 | 75 |
| MIMAT0026566 | mml-miR-130a-5p | 3 | __...... | 8 | 75 |
| MIMAT0017121 | rno-miR-130a-5p | 3 | __...... | 8 | 75 |
| MIMAT0016983 | mmu-miR-130a-5p | 3 | __...... | 8 | 75 |
