| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tatgtcag | 8 | ||
| MIMAT0036599 | tch-miR-9771m | 1 | ......._ | 7 | 87 |
| MIMAT0036216 | chi-miR-411b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0034117 | gra-miR8724 | 8 | _....... | 2 | 87 |
| MIMAT0033789 | pxy-miR-8536b-5p | 8 | ......._ | 2 | 87 |
| MIMAT0033576 | sma-miR-8436-5p | 2 | ......._ | 8 | 87 |
| MIMAT0032895 | ppc-miR-2238g-3p | 2 | _....... | 8 | 87 |
| MIMAT0030209 | bdi-miR7736-3p | 7 | ......._ | 1 | 87 |
| MIMAT0025850 | hsa-miR-6719-3p | 8 | _....... | 2 | 87 |
| MIMAT0025761 | gga-miR-6660-3p | 8 | _....... | 2 | 87 |
| MIMAT0025255 | ptc-miR6451 | 1 | _....... | 7 | 87 |
| MIMAT0022028 | aca-miR-5410-3p | 7 | _....... | 1 | 87 |
| MIMAT0019256 | oar-miR-411b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0015380 | bmo-miR-3203-3p | 1 | _....... | 7 | 87 |
| MIMAT0004061 | osa-miR816 | 8 | ......._ | 2 | 87 |
| MIMAT0033703 | pxy-miR-8494-3p | 8 | .t...... | 1 | 87 |
| MIMAT0031347 | stu-miR156f-5p | 8 | .c...... | 1 | 87 |
| MIMAT0031153 | ama-miR156 | 8 | .c...... | 1 | 87 |
| MIMAT0025885 | mdm-miR156s | 8 | .c...... | 1 | 87 |
| MIMAT0025884 | mdm-miR156r | 8 | .c...... | 1 | 87 |
| MIMAT0025883 | mdm-miR156q | 8 | .c...... | 1 | 87 |
| MIMAT0025882 | mdm-miR156p | 8 | .c...... | 1 | 87 |
| MIMAT0023212 | gma-miR156r | 8 | .c...... | 1 | 87 |
| MIMAT0021262 | mtr-miR5262 | 1 | .c...... | 8 | 87 |
| MIMAT0019283 | oar-miR-654-3p | 1 | ......t. | 8 | 87 |
| MIMAT0016088 | ppy-miR-654-3p | 1 | ......t. | 8 | 87 |
| MIMAT0009359 | bta-miR-654 | 1 | ......t. | 8 | 87 |
| MIMAT0008304 | ptr-miR-654 | 1 | ......t. | 8 | 87 |
| MIMAT0006496 | mml-miR-654-3p | 1 | ......t. | 8 | 87 |
| MIMAT0005214 | smo-miR156b | 8 | .c...... | 1 | 87 |
| MIMAT0004898 | mmu-miR-654-3p | 1 | ......t. | 8 | 87 |
| MIMAT0004814 | hsa-miR-654-3p | 1 | ......t. | 8 | 87 |
| MIMAT0036853 | oha-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0036619 | tch-miR-9771p | 3 | ......__ | 8 | 75 |
| MIMAT0036208 | chi-miR-3959-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036072 | chi-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0035395 | nve-miR-9434 | 7 | __...... | 2 | 75 |
| MIMAT0035198 | efu-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0035168 | efu-miR-9358 | 8 | _......_ | 3 | 75 |
| MIMAT0034720 | eca-miR-9144 | 7 | __...... | 2 | 75 |
| MIMAT0034665 | eca-miR-9116 | 3 | ......__ | 8 | 75 |
| MIMAT0034484 | eca-miR-3959 | 3 | ......__ | 8 | 75 |
| MIMAT0034190 | gra-miR8760 | 8 | _......_ | 3 | 75 |
| MIMAT0033996 | gra-miR8640 | 7 | __...... | 2 | 75 |
| MIMAT0033835 | atr-miR8561.2 | 2 | _......_ | 7 | 75 |
| MIMAT0033834 | atr-miR8561.1 | 6 | _......_ | 1 | 75 |
| MIMAT0033019 | ppc-miR-63k-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032658 | ssa-miR-489-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032443 | ssa-miR-192b-5p | 3 | __...... | 8 | 75 |
| MIMAT0032442 | ssa-miR-192a-2-3p | 3 | __...... | 8 | 75 |
| MIMAT0032441 | ssa-miR-192a-3p | 3 | __...... | 8 | 75 |
| MIMAT0030946 | stu-miR8036-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032261 | rgl-miR7972 | 2 | __...... | 7 | 75 |
| MIMAT0030388 | ptc-miR7828 | 8 | _......_ | 3 | 75 |
| MIMAT0030307 | bdi-miR7777-5p.2 | 7 | __...... | 2 | 75 |
| MIMAT0029631 | crm-miR-7582 | 6 | _......_ | 1 | 75 |
| MIMAT0029583 | cbr-miR-7582 | 6 | _......_ | 1 | 75 |
| MIMAT0029520 | ipu-miR-489 | 6 | _......_ | 1 | 75 |
| MIMAT0026308 | ccr-miR-489 | 6 | _......_ | 1 | 75 |
| MIMAT0027569 | hsa-miR-6834-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027362 | hsa-miR-6730-3p | 7 | __...... | 2 | 75 |
| MIMAT0025657 | gga-miR-6575-5p | 2 | __...... | 7 | 75 |
| MIMAT0025555 | bta-miR-3660 | 7 | __...... | 2 | 75 |
| MIMAT0025546 | bta-miR-411c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025375 | ssc-miR-489 | 8 | _......_ | 3 | 75 |
| MIMAT0024736 | nta-miR6147 | 6 | _......_ | 1 | 75 |
| MIMAT0024393 | ppy-miR-4526 | 7 | __...... | 2 | 75 |
| MIMAT0024371 | ppy-miR-3660 | 8 | __...... | 3 | 75 |
| MIMAT0024252 | ggo-miR-668 | 1 | _......_ | 6 | 75 |
| MIMAT0024040 | ptr-miR-3660 | 7 | __...... | 2 | 75 |
| MIMAT0023519 | ath-miR5996 | 6 | _......_ | 1 | 75 |
| MIMAT0022630 | ola-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0022625 | ola-miR-192-3p | 3 | __...... | 8 | 75 |
| MIMAT0022317 | cin-miR-5597-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021975 | aca-miR-489-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021894 | aca-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0021794 | aca-miR-1662-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020116 | bfl-miR-4872c | 1 | __...... | 6 | 75 |
| MIMAT0019792 | hsa-miR-4697-3p | 1 | __...... | 6 | 75 |
| MIMAT0019498 | pma-miR-192-3p | 3 | __...... | 8 | 75 |
| MIMAT0019311 | oar-miR-668-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019303 | oar-miR-3959-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019065 | hsa-miR-4526 | 7 | __...... | 2 | 75 |
| MIMAT0018314 | gma-miR4398 | 1 | __...... | 6 | 75 |
| MIMAT0018301 | gma-miR4387d | 1 | _......_ | 6 | 75 |
| MIMAT0018752 | tca-miR-3849-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018633 | tca-miR-3805a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018081 | hsa-miR-3660 | 7 | __...... | 2 | 75 |
| MIMAT0018044 | vvi-miR3635-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015908 | ppy-miR-489 | 7 | _......_ | 2 | 75 |
| MIMAT0017690 | aly-miR848-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015465 | bmo-miR-3280 | 6 | _......_ | 1 | 75 |
| MIMAT0015456 | bmo-miR-3271 | 6 | _......_ | 1 | 75 |
| MIMAT0014618 | tgu-miR-489-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014599 | tgu-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0014459 | tgu-miR-1662 | 7 | _......_ | 2 | 75 |
| MIMAT0014210 | aae-miR-277-5p | 3 | __...... | 8 | 75 |
| MIMAT0013205 | eca-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0012943 | eca-miR-489 | 7 | _......_ | 2 | 75 |
| MIMAT0013416 | mtr-miR2646b | 8 | _......_ | 3 | 75 |
| MIMAT0013415 | mtr-miR2646a | 8 | _......_ | 3 | 75 |
| MIMAT0013399 | mtr-miR2633 | 6 | _......_ | 1 | 75 |
| MIMAT0011912 | bta-miR-2368-3p | 3 | __...... | 8 | 75 |
| MIMAT0009942 | bta-miR-489 | 7 | _......_ | 2 | 75 |
| MIMAT0009860 | cfa-miR-489 | 7 | _......_ | 2 | 75 |
| MIMAT0009852 | cfa-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0009270 | bta-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0032072 | dvi-miR-277-5p | 3 | __...... | 8 | 75 |
| MIMAT0008164 | ptr-miR-489 | 7 | _......_ | 2 | 75 |
| MIMAT0011144 | xla-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0006349 | mml-miR-489-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007565 | gga-miR-1679 | 2 | __...... | 7 | 75 |
| MIMAT0007543 | gga-miR-1662 | 7 | _......_ | 2 | 75 |
| MIMAT0006025 | odi-miR-1474 | 1 | __...... | 6 | 75 |
| MIMAT0007323 | oan-miR-1419g-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007263 | oan-miR-1419e-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007254 | oan-miR-1419d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007020 | oan-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0026749 | hsa-miR-513b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005117 | ppt-miR1028a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004363 | ppt-miR534b | 1 | ......__ | 6 | 75 |
| MIMAT0005808 | ghr-miR156c | 1 | __...... | 6 | 75 |
| MIMAT0004917 | hsa-miR-888-3p | 8 | __...... | 3 | 75 |
| MIMAT0004309 | ath-miR863-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004270 | ath-miR848 | 6 | _......_ | 1 | 75 |
| MIMAT0004135 | mdo-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0003642 | xtr-miR-489 | 8 | _......_ | 3 | 75 |
| MIMAT0003634 | xtr-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0003365 | gga-miR-489-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003138 | ppt-miR534a | 1 | ......__ | 6 | 75 |
| MIMAT0003113 | rno-miR-489-3p | 7 | _......_ | 2 | 75 |
| MIMAT0002940 | dre-miR-489 | 8 | _......_ | 3 | 75 |
| MIMAT0002939 | tni-miR-489 | 8 | _......_ | 3 | 75 |
| MIMAT0002938 | fru-miR-489 | 8 | _......_ | 3 | 75 |
| MIMAT0002895 | tni-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002894 | fru-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002805 | hsa-miR-489-3p | 7 | _......_ | 2 | 75 |
| MIMAT0002593 | ppa-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002592 | sla-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002591 | ppy-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002590 | ggo-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002589 | ptr-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002588 | mml-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0002081 | ptc-miR478f | 6 | _......_ | 1 | 75 |
| MIMAT0002079 | ptc-miR478d | 6 | _......_ | 1 | 75 |
| MIMAT0001290 | dre-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0026531 | gga-miR-301a-5p | 7 | __...... | 2 | 75 |
| MIMAT0001140 | gga-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0000892 | rno-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0000665 | mmu-miR-223-3p | 1 | __...... | 6 | 75 |
| MIMAT0020804 | dme-miR-277-5p | 3 | __...... | 8 | 75 |
| MIMAT0000280 | hsa-miR-223-3p | 1 | __...... | 6 | 75 |
