| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tattttct | 8 | ||
| MIMAT0030150 | bdi-miR7714-5p | 1 | ........ | 8 | 100 |
| MIMAT0001000 | ebv-miR-BART2-5p | 1 | ........ | 8 | 100 |
| MIMAT0035426 | nve-miR-9467 | 2 | _....... | 8 | 87 |
| MIMAT0034559 | eca-miR-9018 | 1 | _....... | 7 | 87 |
| MIMAT0030367 | hhi-miR-737 | 7 | _....... | 1 | 87 |
| MIMAT0023554 | ame-miR-6006-3p | 1 | _....... | 7 | 87 |
| MIMAT0020156 | dme-miR-4946-5p | 1 | ......._ | 7 | 87 |
| MIMAT0018671 | tca-miR-3822-3p | 2 | ......._ | 8 | 87 |
| MIMAT0011791 | dme-miR-2283-5p | 7 | ......._ | 1 | 87 |
| MIMAT0006886 | oan-miR-1422b-3p | 7 | _....... | 1 | 87 |
| MIMAT0006880 | oan-miR-1422a-3p | 8 | _....... | 2 | 87 |
| MIMAT0035407 | nve-miR-9446 | 1 | .t...... | 8 | 87 |
| MIMAT0034629 | eca-miR-9084 | 1 | .g...... | 8 | 87 |
| MIMAT0034595 | eca-miR-9051 | 1 | ......g. | 8 | 87 |
| MIMAT0028396 | mmu-miR-7214-5p | 1 | .g...... | 8 | 87 |
| MIMAT0019578 | pma-miR-4547-5p | 1 | .g...... | 8 | 87 |
| MIMAT0018678 | tca-miR-3825-5p | 1 | .g...... | 8 | 87 |
| MIMAT0011988 | bta-miR-2421 | 1 | ......t. | 8 | 87 |
| MIMAT0009801 | nve-miR-2039-3p | 8 | ......a. | 1 | 87 |
| MIMAT0004458 | mdv2-miR-M18-5p | 1 | .g...... | 8 | 87 |
| MIMAT0026623 | hsa-miR-627-3p | 1 | .c...... | 8 | 87 |
| MIMAT0036614 | tch-miR-9771o | 6 | __...... | 1 | 75 |
| MIMAT0036557 | tch-miR-9771j | 6 | __...... | 1 | 75 |
| MIMAT0035354 | gsa-miR-9403-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035274 | gsa-miR-124a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0034241 | gra-miR8787 | 1 | __...... | 6 | 75 |
| MIMAT0034200 | gra-miR8766 | 2 | ......__ | 7 | 75 |
| MIMAT0033899 | atr-miR8608 | 1 | __...... | 6 | 75 |
| MIMAT0033872 | atr-miR8586 | 1 | __...... | 6 | 75 |
| MIMAT0033828 | atr-miR8553b | 3 | ......__ | 8 | 75 |
| MIMAT0033550 | sma-miR-8423-5p | 1 | __...... | 6 | 75 |
| MIMAT0033517 | sma-miR-8406-3p | 1 | __...... | 6 | 75 |
| MIMAT0031377 | osa-miR5539b | 7 | __...... | 2 | 75 |
| MIMAT0031244 | stu-miR5303i | 2 | ......__ | 7 | 75 |
| MIMAT0031242 | stu-miR5303g | 2 | ......__ | 7 | 75 |
| MIMAT0031241 | stu-miR5303j | 3 | ......__ | 8 | 75 |
| MIMAT0030918 | stu-miR7990b | 3 | _......_ | 8 | 75 |
| MIMAT0031200 | stu-miR8001b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030878 | stu-miR7993d | 2 | ......__ | 7 | 75 |
| MIMAT0030877 | stu-miR7993c | 2 | ......__ | 7 | 75 |
| MIMAT0030876 | stu-miR7993b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030875 | stu-miR7993a | 2 | ......__ | 7 | 75 |
| MIMAT0032241 | rgl-miR7800 | 1 | ......__ | 6 | 75 |
| MIMAT0030153 | bdi-miR7715-3p | 8 | __...... | 3 | 75 |
| MIMAT0029360 | lja-miR7535 | 8 | _......_ | 3 | 75 |
| MIMAT0029155 | ghr-miR7508 | 8 | __...... | 3 | 75 |
| MIMAT0029138 | ghr-miR7493 | 3 | ......__ | 8 | 75 |
| MIMAT0028927 | mdo-miR-7398u-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028755 | mdo-miR-1544d-3p | 3 | __...... | 8 | 75 |
| MIMAT0031034 | mdo-miR-1544e-3p | 3 | __...... | 8 | 75 |
| MIMAT0028747 | mdo-miR-1544c-3p | 3 | __...... | 8 | 75 |
| MIMAT0028745 | mdo-miR-1544b-3p | 3 | __...... | 8 | 75 |
| MIMAT0028549 | mdo-miR-7286-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026435 | sbi-miR6229-3p | 3 | __...... | 8 | 75 |
| MIMAT0026396 | sbi-miR6218-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025811 | gga-miR-6701-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025025 | sma-miR-124a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027320 | ppe-miR6288a | 6 | _......_ | 1 | 75 |
| MIMAT0027301 | ppe-miR6274a | 1 | ......__ | 6 | 75 |
| MIMAT0027275 | ppe-miR6259 | 7 | __...... | 2 | 75 |
| MIMAT0024777 | nta-miR6162 | 6 | __...... | 1 | 75 |
| MIMAT0024731 | nta-miR6145a | 2 | _......_ | 7 | 75 |
| MIMAT0027258 | pgi-miR6137b | 8 | _......_ | 3 | 75 |
| MIMAT0027257 | pgi-miR6137a | 8 | _......_ | 3 | 75 |
| MIMAT0024349 | mml-miR-3145-3p | 1 | ......__ | 6 | 75 |
| MIMAT0023111 | tur-miR-5738-3p | 1 | __...... | 6 | 75 |
| MIMAT0022175 | osa-miR5539a | 7 | __...... | 2 | 75 |
| MIMAT0022159 | osa-miR5524 | 8 | _......_ | 3 | 75 |
| MIMAT0022110 | pti-miR5477 | 7 | ......__ | 2 | 75 |
| MIMAT0022031 | aca-miR-5412-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021622 | gma-miR5380b | 6 | _......_ | 1 | 75 |
| MIMAT0021621 | gma-miR5380a | 6 | _......_ | 1 | 75 |
| MIMAT0021620 | gma-miR5379 | 8 | _......_ | 3 | 75 |
| MIMAT0021603 | gma-miR5369 | 8 | __...... | 3 | 75 |
| MIMAT0020155 | dme-miR-4945-5p | 1 | __...... | 6 | 75 |
| MIMAT0019746 | hsa-miR-4668-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018308 | gma-miR4393a | 8 | __...... | 3 | 75 |
| MIMAT0018539 | ame-miR-3765 | 8 | __...... | 3 | 75 |
| MIMAT0018083 | hsa-miR-3662 | 6 | _......_ | 1 | 75 |
| MIMAT0017945 | ath-miR3440b-5p | 1 | __...... | 6 | 75 |
| MIMAT0016834 | cin-miR-4213-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016832 | cin-miR-4211-5p | 8 | __...... | 3 | 75 |
| MIMAT0016786 | cin-miR-4177-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016693 | cin-miR-4106-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016558 | cin-miR-4034-3p | 2 | __...... | 7 | 75 |
| MIMAT0016262 | sja-miR-124-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017622 | aly-miR838-3p | 1 | __...... | 6 | 75 |
| MIMAT0015408 | bmo-miR-3226 | 3 | ......__ | 8 | 75 |
| MIMAT0013821 | osa-miR2871b | 1 | ......__ | 6 | 75 |
| MIMAT0013820 | osa-miR2871a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012865 | hvt-miR-H13 | 1 | __...... | 6 | 75 |
| MIMAT0013718 | bmo-miR-2810 | 3 | _......_ | 8 | 75 |
| MIMAT0015306 | bmo-miR-2778a-4-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012340 | dps-miR-2542-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012023 | bta-miR-2446 | 7 | ......__ | 2 | 75 |
| MIMAT0009774 | nve-miR-2024g-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009761 | nve-miR-2024b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009757 | nve-miR-2024a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007793 | osa-miR1860-5p | 6 | __...... | 1 | 75 |
| MIMAT0026768 | mdo-miR-1544a-3p | 3 | __...... | 8 | 75 |
| MIMAT0007397 | gma-miR1534 | 1 | ......__ | 6 | 75 |
| MIMAT0005979 | mdv1-miR-M9-5p | 1 | __...... | 6 | 75 |
| MIMAT0007100 | oan-miR-1422m-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006896 | oan-miR-1422k-3p | 6 | __...... | 1 | 75 |
| MIMAT0006892 | oan-miR-1422c-3p | 6 | __...... | 1 | 75 |
| MIMAT0026740 | hsa-miR-1250-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004474 | mdv2-miR-M28-5p | 1 | __...... | 6 | 75 |
| MIMAT0004260 | ath-miR838 | 1 | __...... | 6 | 75 |
| MIMAT0003923 | mdv1-miR-M3-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003474 | mmu-miR-694 | 8 | _......_ | 3 | 75 |
