| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcaagtt | 7 | ||
| MIMAT0035589 | dvi-miR-969-3p | 7 | ....... | 1 | 100 |
| MIMAT0035369 | nve-miR-9414-5p | 7 | ....... | 1 | 100 |
| MIMAT0033535 | sma-miR-8415-3p | 7 | ....... | 1 | 100 |
| MIMAT0029988 | mtr-miR7696b-5p | 1 | ....... | 7 | 100 |
| MIMAT0029986 | mtr-miR7696a-5p | 1 | ....... | 7 | 100 |
| MIMAT0028584 | mdo-miR-7298-5p | 1 | ....... | 7 | 100 |
| MIMAT0022411 | ath-miR5647 | 1 | ....... | 7 | 100 |
| MIMAT0015575 | bmo-miR-3382-5p | 1 | ....... | 7 | 100 |
| MIMAT0016947 | rlcv-miR-rL1-24-5p | 2 | ....... | 8 | 100 |
| MIMAT0012480 | dsi-miR-969-3p | 7 | ....... | 1 | 100 |
| MIMAT0012276 | dps-miR-969-3p | 7 | ....... | 1 | 100 |
| MIMAT0012154 | sme-miR-2163-5p | 8 | ....... | 2 | 100 |
| MIMAT0020866 | dme-miR-969-3p | 7 | ....... | 1 | 100 |
| MIMAT0003717 | ebv-miR-BART18-5p | 1 | ....... | 7 | 100 |
| MIMAT0037253 | ata-miR169h-3p | 2 | _...... | 7 | 85 |
| MIMAT0037207 | ata-miR169d-3p | 3 | _...... | 8 | 85 |
| MIMAT0036096 | chi-miR-2284e | 8 | _...... | 3 | 85 |
| MIMAT0034878 | efu-miR-544 | 2 | _...... | 7 | 85 |
| MIMAT0034828 | efu-miR-9226 | 1 | ......_ | 6 | 85 |
| MIMAT0033337 | str-lin-4-3p | 2 | _...... | 7 | 85 |
| MIMAT0032385 | ssa-miR-152-5p | 1 | _...... | 6 | 85 |
| MIMAT0031368 | stu-miR169e-3p | 2 | _...... | 7 | 85 |
| MIMAT0030976 | stu-miR8050-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030783 | prd-miR-7918c-3p | 3 | _...... | 8 | 85 |
| MIMAT0030781 | prd-miR-7918d-3p | 3 | _...... | 8 | 85 |
| MIMAT0030677 | prd-miR-7918f-3p | 2 | _...... | 7 | 85 |
| MIMAT0030675 | prd-miR-7918e-3p | 3 | _...... | 8 | 85 |
| MIMAT0030609 | prd-miR-7918b-3p | 3 | _...... | 8 | 85 |
| MIMAT0030607 | prd-miR-7918a-3p | 2 | _...... | 7 | 85 |
| MIMAT0030211 | bdi-miR7737-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030002 | mtr-miR169l-3p | 3 | _...... | 8 | 85 |
| MIMAT0029359 | lja-miR7534 | 8 | _...... | 3 | 85 |
| MIMAT0028402 | mmu-miR-7217-5p | 6 | _...... | 1 | 85 |
| MIMAT0026449 | sbi-miR6233-3p | 1 | _...... | 6 | 85 |
| MIMAT0026397 | sbi-miR6218-3p | 2 | _...... | 7 | 85 |
| MIMAT0025535 | bta-miR-378b | 6 | ......_ | 1 | 85 |
| MIMAT0025483 | hsa-miR-6513-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025177 | mmu-miR-873b | 2 | _...... | 7 | 85 |
| MIMAT0023286 | osa-miR5814 | 3 | ......_ | 8 | 85 |
| MIMAT0023181 | gma-miR5776 | 6 | _...... | 1 | 85 |
| MIMAT0022490 | hsa-miR-5697 | 1 | ......_ | 6 | 85 |
| MIMAT0022360 | mmu-miR-5616-3p | 6 | _...... | 1 | 85 |
| MIMAT0022177 | osa-miR5541 | 1 | ......_ | 6 | 85 |
| MIMAT0021258 | mtr-miR5258 | 1 | ......_ | 6 | 85 |
| MIMAT0021253 | mtr-miR5255 | 8 | ......_ | 3 | 85 |
| MIMAT0018237 | gma-miR4348a | 7 | _...... | 2 | 85 |
| MIMAT0018794 | tca-miR-375-5p | 6 | ......_ | 1 | 85 |
| MIMAT0016933 | bta-miR-2957 | 2 | _...... | 7 | 85 |
| MIMAT0016594 | cin-miR-4052-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016507 | cin-miR-4010-3p | 1 | _...... | 6 | 85 |
| MIMAT0016331 | ahy-miR3509-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017498 | aly-miR169g-3p | 2 | _...... | 7 | 85 |
| MIMAT0017496 | aly-miR169f-3p | 2 | _...... | 7 | 85 |
| MIMAT0017494 | aly-miR169e-3p | 2 | _...... | 7 | 85 |
| MIMAT0017492 | aly-miR169d-3p | 2 | _...... | 7 | 85 |
| MIMAT0017488 | aly-miR169b-3p | 3 | _...... | 8 | 85 |
| MIMAT0017486 | aly-miR169a-3p | 3 | _...... | 8 | 85 |
| MIMAT0015329 | zma-miR169r-3p | 3 | _...... | 8 | 85 |
| MIMAT0013695 | bmo-miR-2795 | 1 | _...... | 6 | 85 |
| MIMAT0013570 | cte-miR-216c | 1 | _...... | 6 | 85 |
| MIMAT0012383 | dps-miR-2560-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011901 | bta-miR-2363 | 8 | _...... | 3 | 85 |
| MIMAT0032049 | dvi-miR-125-3p | 2 | _...... | 7 | 85 |
| MIMAT0032041 | dvi-miR-314-5p | 8 | _...... | 3 | 85 |
| MIMAT0019113 | tca-miR-100-3p | 1 | _...... | 6 | 85 |
| MIMAT0007633 | gga-miR-1731-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020937 | gma-miR1516a-5p | 1 | _...... | 6 | 85 |
| MIMAT0005196 | ppt-miR1069-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004462 | mdv2-miR-M20-3p | 1 | ......_ | 6 | 85 |
| MIMAT0020879 | dme-miR-982-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004867 | mmu-miR-327 | 6 | ......_ | 1 | 85 |
| MIMAT0015141 | zma-miR169b-3p | 3 | _...... | 8 | 85 |
| MIMAT0015140 | zma-miR169a-3p | 3 | _...... | 8 | 85 |
| MIMAT0031898 | ath-miR169f-3p | 2 | _...... | 7 | 85 |
| MIMAT0031897 | ath-miR169b-3p | 3 | _...... | 8 | 85 |
| MIMAT0020840 | dme-miR-314-5p | 8 | _...... | 3 | 85 |
| MIMAT0020831 | dme-miR-125-3p | 2 | _...... | 7 | 85 |
| MIMAT0031886 | ath-miR169a-3p | 3 | _...... | 8 | 85 |
