| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcaccaac | 8 | ||
| MIMAT0015263 | cin-miR-200-5p | 1 | ........ | 8 | 100 |
| MIMAT0034037 | gra-miR8666 | 7 | ......._ | 1 | 87 |
| MIMAT0030430 | hsa-miR-7855-5p | 7 | ......._ | 1 | 87 |
| MIMAT0029373 | lja-miR7546 | 7 | ......._ | 1 | 87 |
| MIMAT0025701 | gga-miR-6607-5p | 8 | _....... | 2 | 87 |
| MIMAT0022467 | gma-miR5679 | 7 | ......._ | 1 | 87 |
| MIMAT0019593 | pma-miR-4561 | 8 | ......._ | 2 | 87 |
| MIMAT0017623 | aly-miR839-5p | 1 | _....... | 7 | 87 |
| MIMAT0007910 | sly-miR1918 | 8 | _....... | 2 | 87 |
| MIMAT0007665 | gga-miR-1758 | 1 | ......._ | 7 | 87 |
| MIMAT0005274 | smo-miR1115-3p | 1 | ......._ | 7 | 87 |
| MIMAT0020873 | dme-miR-976-5p | 8 | ......._ | 2 | 87 |
| MIMAT0035050 | efu-miR-9323 | 1 | ......c. | 8 | 87 |
| MIMAT0028543 | mdo-miR-7284-3p | 1 | .t...... | 8 | 87 |
| MIMAT0028474 | mdo-miR-7254-5p | 1 | ......c. | 8 | 87 |
| MIMAT0027753 | mmu-miR-6926-3p | 1 | ......t. | 8 | 87 |
| MIMAT0020651 | rgl-miR5140 | 8 | ......g. | 1 | 87 |
| MIMAT0016851 | hsa-miR-4299 | 8 | ......g. | 1 | 87 |
| MIMAT0016162 | ppy-miR-1226 | 1 | ......g. | 8 | 87 |
| MIMAT0007535 | gga-miR-1656 | 1 | ......g. | 8 | 87 |
| MIMAT0015259 | cin-miR-133-5p | 8 | .t...... | 1 | 87 |
| MIMAT0005579 | mml-miR-1226 | 1 | ......g. | 8 | 87 |
| MIMAT0005578 | ptr-miR-1226 | 1 | ......g. | 8 | 87 |
| MIMAT0005577 | hsa-miR-1226-3p | 1 | ......g. | 8 | 87 |
| MIMAT0012128 | sme-miR-277d-5p | 8 | .a...... | 1 | 87 |
| MIMAT0017191 | mghv-miR-M1-8-3p | 1 | .g...... | 8 | 87 |
| MIMAT0037215 | ata-miR1432-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036140 | chi-miR-329a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036035 | chi-miR-197-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035592 | dvi-miR-971-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035355 | gsa-miR-9403-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035181 | efu-miR-9364 | 1 | ......__ | 6 | 75 |
| MIMAT0035111 | efu-miR-9343 | 8 | __...... | 3 | 75 |
| MIMAT0034909 | efu-miR-490 | 1 | __...... | 6 | 75 |
| MIMAT0034876 | efu-miR-9257 | 6 | _......_ | 1 | 75 |
| MIMAT0034788 | efu-miR-9202 | 6 | ......__ | 1 | 75 |
| MIMAT0034780 | efu-miR-9198b | 7 | _......_ | 2 | 75 |
| MIMAT0034273 | psj-miR8788b-3p | 8 | __...... | 3 | 75 |
| MIMAT0034271 | psj-miR8788a-3p | 8 | __...... | 3 | 75 |
| MIMAT0034232 | gra-miR8782 | 7 | _......_ | 2 | 75 |
| MIMAT0033583 | sma-miR-8439-3p | 6 | _......_ | 1 | 75 |
| MIMAT0033067 | ppc-miR-8282a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033032 | ppc-miR-8270-5p | 6 | __...... | 1 | 75 |
| MIMAT0031694 | bbe-miR-4868c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031624 | bbe-miR-2062-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031619 | bbe-miR-2060a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030576 | prd-miR-9b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030243 | bdi-miR7751-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029868 | mmu-miR-7677-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029145 | ghr-miR7498 | 7 | ......__ | 2 | 75 |
| MIMAT0029035 | gga-miR-7440-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029004 | oan-miR-7427-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028559 | mdo-miR-7288-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028558 | mdo-miR-7288-5p | 7 | __...... | 2 | 75 |
| MIMAT0028464 | mdo-miR-7249-5p | 6 | __...... | 1 | 75 |
| MIMAT0026055 | mdm-miR7124b | 1 | _......_ | 6 | 75 |
| MIMAT0026054 | mdm-miR7124a | 1 | _......_ | 6 | 75 |
| MIMAT0028006 | mmu-miR-7051-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027768 | mmu-miR-6934-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027701 | mmu-miR-6900-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025848 | hsa-miR-6511b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025834 | gga-miR-6563-5p | 6 | __...... | 1 | 75 |
| MIMAT0025791 | gga-miR-6685-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025479 | hsa-miR-6511a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025070 | rno-miR-6331 | 8 | _......_ | 3 | 75 |
| MIMAT0025036 | sma-miR-2e-5p | 2 | __...... | 7 | 75 |
| MIMAT0024998 | hme-miR-971 | 6 | _......_ | 1 | 75 |
| MIMAT0024786 | hbr-miR6168 | 8 | _......_ | 3 | 75 |
| MIMAT0024686 | nta-miR171a | 8 | _......_ | 3 | 75 |
| MIMAT0024559 | cca-miR6108f | 8 | ......__ | 3 | 75 |
| MIMAT0024180 | ggo-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0023665 | ame-miR-6043 | 7 | ......__ | 2 | 75 |
| MIMAT0023608 | stu-miR6025 | 2 | __...... | 7 | 75 |
| MIMAT0023606 | nta-miR6025a | 2 | __...... | 7 | 75 |
| MIMAT0023080 | tur-miR-133-5p | 7 | __...... | 2 | 75 |
| MIMAT0022443 | ath-miR5665 | 6 | _......_ | 1 | 75 |
| MIMAT0022371 | mmu-miR-5622-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022311 | cel-miR-356b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021683 | sbi-miR5385 | 3 | _......_ | 8 | 75 |
| MIMAT0021407 | rmi-miR-5334 | 7 | __...... | 2 | 75 |
| MIMAT0020710 | bdi-miR166g-3p | 8 | ......__ | 3 | 75 |
| MIMAT0020555 | osa-miR5073 | 8 | _......_ | 3 | 75 |
| MIMAT0020519 | ath-miR5015 | 6 | _......_ | 1 | 75 |
| MIMAT0020106 | bfl-miR-4868c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018748 | tca-miR-9d-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018695 | tca-miR-3832-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018171 | mghv-miR-M1-12-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018544 | ame-miR-971 | 6 | _......_ | 1 | 75 |
| MIMAT0016805 | cin-miR-4187-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016577 | cin-miR-4044-5p | 7 | __...... | 2 | 75 |
| MIMAT0016417 | cin-miR-375-5p | 8 | __...... | 3 | 75 |
| MIMAT0016394 | cin-miR-3575-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016348 | ahy-miR3521 | 6 | ......__ | 1 | 75 |
| MIMAT0016294 | sja-miR-2e-5p | 2 | __...... | 7 | 75 |
| MIMAT0015463 | bmo-miR-3278 | 6 | _......_ | 1 | 75 |
| MIMAT0014745 | api-miR-971 | 6 | _......_ | 1 | 75 |
| MIMAT0014672 | hma-miR-3005 | 6 | _......_ | 1 | 75 |
| MIMAT0019187 | rlcv-miR-rL1-19-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015332 | zma-miR171n-5p | 8 | _......_ | 3 | 75 |
| MIMAT0012959 | eca-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0013580 | cte-miR-2711 | 6 | _......_ | 1 | 75 |
| MIMAT0012357 | dps-miR-2548-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012226 | dps-miR-971-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011555 | crm-miR-79-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019169 | bfl-miR-2062-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019165 | spu-miR-2002-5p | 3 | __...... | 8 | 75 |
| MIMAT0009257 | bta-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0032062 | dvi-miR-133-5p | 7 | __...... | 2 | 75 |
| MIMAT0007924 | sly-miR171c | 8 | _......_ | 3 | 75 |
| MIMAT0007775 | osa-miR1854-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006698 | cfa-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0006230 | mml-miR-197-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007446 | gga-miR-1354 | 8 | ......__ | 3 | 75 |
| MIMAT0005964 | osa-miR1430 | 6 | ......__ | 1 | 75 |
| MIMAT0005861 | mml-miR-1240 | 1 | ......__ | 6 | 75 |
| MIMAT0005547 | mcmv-miR-M55-1 | 6 | ......__ | 1 | 75 |
| MIMAT0005360 | tae-miR1125 | 2 | __...... | 7 | 75 |
| MIMAT0005160 | ppt-miR1046-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005489 | dme-miR-973-5p | 8 | __...... | 3 | 75 |
| MIMAT0005487 | dme-miR-971-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004387 | cre-miR906-5p | 8 | __...... | 3 | 75 |
| MIMAT0004261 | ath-miR839-5p | 2 | __...... | 7 | 75 |
| MIMAT0002604 | ppa-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0002603 | age-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0002602 | mne-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0002601 | ppy-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0002600 | ptr-miR-197 | 2 | ......__ | 7 | 75 |
| MIMAT0006784 | ptc-miR394b-3p | 8 | __...... | 3 | 75 |
| MIMAT0006783 | ptc-miR394a-3p | 8 | __...... | 3 | 75 |
| MIMAT0015198 | zma-miR171c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0001575 | hcmv-miR-UL22A-3p | 1 | ......__ | 6 | 75 |
| MIMAT0020917 | osa-miR169i-5p.2 | 6 | ......__ | 1 | 75 |
| MIMAT0017138 | rno-miR-181a-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000227 | hsa-miR-197-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020322 | cel-miR-79-5p | 8 | _......_ | 3 | 75 |
