| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcactcgt | 8 | ||
| MIMAT0023276 | osa-miR5805 | 8 | ........ | 1 | 100 |
| MIMAT0005559 | mcmv-miR-m108-2-5p.2 | 1 | ........ | 8 | 100 |
| MIMAT0018593 | ame-miR-3726 | 8 | _....... | 2 | 87 |
| MIMAT0034670 | eca-miR-483 | 1 | ......c. | 8 | 87 |
| MIMAT0031392 | mmu-miR-8091 | 8 | ......c. | 1 | 87 |
| MIMAT0028286 | mml-miR-7174-5p | 8 | ......c. | 1 | 87 |
| MIMAT0017638 | aly-miR847-3p | 1 | ......c. | 8 | 87 |
| MIMAT0009901 | cfa-miR-483 | 1 | ......c. | 8 | 87 |
| MIMAT0009327 | bta-miR-483 | 1 | ......c. | 8 | 87 |
| MIMAT0004278 | ath-miR847 | 1 | ......c. | 8 | 87 |
| MIMAT0003120 | mmu-miR-483-3p | 1 | ......c. | 8 | 87 |
| MIMAT0002173 | hsa-miR-483-3p | 1 | ......c. | 8 | 87 |
| MIMAT0037173 | ata-miR6201-3p | 8 | __...... | 3 | 75 |
| MIMAT0037095 | ata-miR156d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035823 | bra-miR156d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035819 | bra-miR156b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035462 | sly-miR9473-3p | 8 | __...... | 3 | 75 |
| MIMAT0035412 | nve-miR-9451 | 6 | __...... | 1 | 75 |
| MIMAT0034873 | efu-miR-9255 | 1 | ......__ | 6 | 75 |
| MIMAT0034820 | efu-miR-9223b | 7 | ......__ | 2 | 75 |
| MIMAT0034715 | eca-miR-514a | 1 | ......__ | 6 | 75 |
| MIMAT0034618 | eca-miR-9073 | 7 | ......__ | 2 | 75 |
| MIMAT0034612 | eca-miR-9067 | 3 | _......_ | 8 | 75 |
| MIMAT0034063 | gra-miR8690 | 7 | ......__ | 2 | 75 |
| MIMAT0033000 | ppc-miR-57-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030339 | hhi-miR-7794 | 6 | ......__ | 1 | 75 |
| MIMAT0028882 | mdo-miR-7392-5p | 7 | __...... | 2 | 75 |
| MIMAT0028735 | mdo-miR-7361-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028391 | mmu-miR-7211-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028342 | mml-miR-7192-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028295 | mml-miR-6794-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027489 | hsa-miR-6794-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025810 | gga-miR-6700-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025389 | ssc-miR-2411 | 8 | ......__ | 3 | 75 |
| MIMAT0025201 | ptc-miR6468-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027276 | ppe-miR6260 | 8 | ......__ | 3 | 75 |
| MIMAT0023545 | ame-miR-6003-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023068 | tur-miR-307-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022288 | hsa-miR-5586-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021517 | asu-miR-5342-5p | 1 | __...... | 6 | 75 |
| MIMAT0020507 | dme-miR-4914-5p | 8 | ......__ | 3 | 75 |
| MIMAT0020010 | sko-miR-4818b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019916 | hsa-miR-4765 | 7 | ......__ | 2 | 75 |
| MIMAT0019698 | hsa-miR-4639-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019693 | hsa-miR-4636 | 2 | __...... | 7 | 75 |
| MIMAT0018061 | dme-miR-3644-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016640 | cin-miR-4076-5p | 8 | __...... | 3 | 75 |
| MIMAT0016363 | gso-miR2109 | 8 | _......_ | 3 | 75 |
| MIMAT0016095 | ppy-miR-668 | 3 | ......__ | 8 | 75 |
| MIMAT0015641 | mmu-miR-3470b | 1 | ......__ | 6 | 75 |
| MIMAT0017408 | aly-miR156f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017404 | aly-miR156d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013859 | bta-miR-2901 | 7 | _......_ | 2 | 75 |
| MIMAT0012839 | rno-miR-668 | 3 | ......__ | 8 | 75 |
| MIMAT0013726 | bmo-miR-2816 | 8 | _......_ | 3 | 75 |
| MIMAT0013495 | mtr-miR2674 | 1 | _......_ | 6 | 75 |
| MIMAT0012422 | dps-miR-2576 | 8 | _......_ | 3 | 75 |
| MIMAT0012194 | dme-miR-307b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012172 | hbv-miR-B20-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011972 | bta-miR-2411-5p | 8 | ......__ | 3 | 75 |
| MIMAT0011932 | bta-miR-2383 | 8 | ......__ | 3 | 75 |
| MIMAT0011595 | crm-miR-67-5p | 2 | __...... | 7 | 75 |
| MIMAT0010136 | lmi-miR-307-5p | 3 | ......__ | 8 | 75 |
| MIMAT0010086 | gma-miR2109-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019129 | tca-miR-307-5p | 3 | ......__ | 8 | 75 |
| MIMAT0008313 | ptr-miR-668 | 3 | ......__ | 8 | 75 |
| MIMAT0006504 | mml-miR-668 | 3 | ......__ | 8 | 75 |
| MIMAT0006031 | odi-miR-1479 | 8 | __...... | 3 | 75 |
| MIMAT0022945 | hsa-miR-1236-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022935 | mtr-miR398a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015237 | bmo-miR-307-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003732 | mmu-miR-668-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003881 | hsa-miR-668-3p | 3 | ......__ | 8 | 75 |
| MIMAT0002080 | ptc-miR478e | 8 | __...... | 3 | 75 |
| MIMAT0022845 | osa-miR156b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020832 | dme-miR-307a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031869 | ath-miR156f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031868 | ath-miR156d-3p | 3 | ......__ | 8 | 75 |
