| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcagaga | 7 | ||
| MIMAT0028654 | mdo-miR-7326-5p | 1 | ....... | 7 | 100 |
| MIMAT0028377 | mml-miR-7205-3p | 7 | ....... | 1 | 100 |
| MIMAT0028145 | ssc-miR-7135-5p | 7 | ....... | 1 | 100 |
| MIMAT0027805 | mmu-miR-6952-3p | 7 | ....... | 1 | 100 |
| MIMAT0019718 | hsa-miR-4653-5p | 7 | ....... | 1 | 100 |
| MIMAT0018196 | hsa-miR-3921 | 7 | ....... | 1 | 100 |
| MIMAT0015422 | bmo-miR-3239 | 1 | ....... | 7 | 100 |
| MIMAT0008403 | hsv1-miR-H5-3p | 2 | ....... | 8 | 100 |
| MIMAT0007873 | mmu-miR-1896 | 8 | ....... | 2 | 100 |
| MIMAT0007712 | gga-miR-1756b | 8 | ....... | 2 | 100 |
| MIMAT0037060 | ssc-miR-9842-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036421 | ggo-miR-518c-5p | 6 | _...... | 1 | 85 |
| MIMAT0036143 | chi-miR-330-5p | 6 | _...... | 1 | 85 |
| MIMAT0035529 | bdi-miR845 | 8 | ......_ | 3 | 85 |
| MIMAT0034812 | efu-miR-9220 | 6 | _...... | 1 | 85 |
| MIMAT0034805 | efu-miR-9214 | 7 | _...... | 2 | 85 |
| MIMAT0032598 | ssa-miR-301d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030321 | bdi-miR7783-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029842 | mmu-miR-7668-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029562 | ipu-miR-7563c | 3 | ......_ | 8 | 85 |
| MIMAT0028961 | oan-miR-7407-3p | 8 | _...... | 3 | 85 |
| MIMAT0028948 | oan-miR-7403-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028943 | oan-miR-7400-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028399 | mmu-miR-7215-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026101 | cme-miR1863 | 8 | ......_ | 3 | 85 |
| MIMAT0028086 | mmu-miR-7090-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028075 | mmu-miR-7084-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028032 | mmu-miR-7064-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027947 | mmu-miR-7021-3p | 6 | _...... | 1 | 85 |
| MIMAT0027549 | hsa-miR-6824-3p | 6 | _...... | 1 | 85 |
| MIMAT0027535 | hsa-miR-6817-3p | 8 | _...... | 3 | 85 |
| MIMAT0027429 | hsa-miR-6764-3p | 6 | _...... | 1 | 85 |
| MIMAT0027358 | hsa-miR-6728-3p | 6 | _...... | 1 | 85 |
| MIMAT0025788 | gga-miR-6683-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025778 | gga-miR-6675-3p | 6 | _...... | 1 | 85 |
| MIMAT0025348 | pde-miR1311 | 1 | ......_ | 6 | 85 |
| MIMAT0025209 | ptc-miR6470 | 6 | ......_ | 1 | 85 |
| MIMAT0020186 | dme-miR-4963-3p | 8 | _...... | 3 | 85 |
| MIMAT0019900 | hsa-miR-4756-3p | 2 | _...... | 7 | 85 |
| MIMAT0019822 | hsa-miR-4714-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019592 | pma-miR-4560 | 6 | _...... | 1 | 85 |
| MIMAT0019533 | pma-miR-222-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018228 | gma-miR4340 | 3 | _...... | 8 | 85 |
| MIMAT0018193 | hsa-miR-3919 | 2 | _...... | 7 | 85 |
| MIMAT0018701 | tca-miR-3834-3p | 6 | _...... | 1 | 85 |
| MIMAT0018163 | pab-miR1863 | 8 | ......_ | 3 | 85 |
| MIMAT0018162 | pab-miR1311 | 1 | ......_ | 6 | 85 |
| MIMAT0016292 | sja-miR-3486-5p | 6 | _...... | 1 | 85 |
| MIMAT0016036 | ppy-miR-593 | 8 | _...... | 3 | 85 |
| MIMAT0015833 | ppy-miR-330-5p | 6 | _...... | 1 | 85 |
| MIMAT0017738 | ath-miR3434-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015404 | bmo-miR-3223-3p | 7 | _...... | 2 | 85 |
| MIMAT0027027 | hsa-miR-3192-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022732 | hsa-miR-3191-5p | 7 | _...... | 2 | 85 |
| MIMAT0014985 | hsa-miR-3123 | 1 | _...... | 6 | 85 |
| MIMAT0013836 | osa-miR1863b | 8 | ......_ | 3 | 85 |
| MIMAT0013012 | eca-miR-330 | 6 | _...... | 1 | 85 |
| MIMAT0011902 | bta-miR-2364 | 6 | _...... | 1 | 85 |
| MIMAT0011304 | dre-miR-2196 | 8 | _...... | 3 | 85 |
| MIMAT0010045 | osa-miR2090 | 8 | ......_ | 3 | 85 |
| MIMAT0009893 | cfa-miR-330 | 6 | _...... | 1 | 85 |
| MIMAT0009128 | pta-miR1311 | 1 | ......_ | 6 | 85 |
| MIMAT0008264 | ptr-miR-593 | 8 | _...... | 3 | 85 |
| MIMAT0007813 | osa-miR1863a | 8 | ......_ | 3 | 85 |
| MIMAT0006630 | cfa-miR-1837 | 3 | ......_ | 8 | 85 |
| MIMAT0006542 | mml-miR-942-5p | 8 | _...... | 3 | 85 |
| MIMAT0006453 | mml-miR-593 | 8 | _...... | 3 | 85 |
| MIMAT0006270 | mml-miR-330-5p | 6 | _...... | 1 | 85 |
| MIMAT0007695 | gga-miR-1783 | 8 | ......_ | 3 | 85 |
| MIMAT0007664 | gga-miR-1757 | 1 | ......_ | 6 | 85 |
| MIMAT0007592 | gga-miR-1700 | 3 | ......_ | 8 | 85 |
| MIMAT0007579 | gga-miR-1689-5p | 6 | _...... | 1 | 85 |
| MIMAT0007528 | gga-miR-1650 | 8 | ......_ | 3 | 85 |
| MIMAT0007523 | gga-miR-1647 | 6 | _...... | 1 | 85 |
| MIMAT0006147 | mdo-miR-1547-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006017 | hiv1-miR-TAR-3p | 6 | _...... | 1 | 85 |
| MIMAT0006016 | hiv1-miR-TAR-5p | 8 | _...... | 3 | 85 |
| MIMAT0007343 | gga-miR-1465 | 3 | ......_ | 8 | 85 |
| MIMAT0004845 | mmu-miR-881-5p | 1 | _...... | 6 | 85 |
| MIMAT0004303 | ath-miR859 | 8 | _...... | 3 | 85 |
| MIMAT0004245 | ath-miR829-3p.1 | 8 | ......_ | 3 | 85 |
| MIMAT0004802 | hsa-miR-593-3p | 8 | _...... | 3 | 85 |
| MIMAT0002847 | hsa-miR-518c-5p | 6 | _...... | 1 | 85 |
| MIMAT0004693 | hsa-miR-330-5p | 6 | _...... | 1 | 85 |
| MIMAT0004642 | mmu-miR-330-5p | 6 | _...... | 1 | 85 |
| MIMAT0004641 | rno-miR-330-5p | 6 | _...... | 1 | 85 |
