| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcagcgtg | 8 | ||
| MIMAT0032627 | ssa-miR-375-2-5p | 7 | ......._ | 1 | 87 |
| MIMAT0029966 | mtr-miR2653d | 8 | _....... | 2 | 87 |
| MIMAT0018809 | tca-miR-3863-3p | 1 | ......._ | 7 | 87 |
| MIMAT0017564 | aly-miR397b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0012731 | iltv-miR-I6-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013438 | mtr-miR2653c | 8 | _....... | 2 | 87 |
| MIMAT0013437 | mtr-miR2653b | 8 | _....... | 2 | 87 |
| MIMAT0013436 | mtr-miR2653a | 8 | _....... | 2 | 87 |
| MIMAT0034912 | efu-miR-9275 | 1 | .g...... | 8 | 87 |
| MIMAT0024162 | ggo-miR-574 | 8 | .g...... | 1 | 87 |
| MIMAT0018577 | ame-miR-3793 | 1 | .g...... | 8 | 87 |
| MIMAT0013951 | ssc-miR-574 | 8 | .g...... | 1 | 87 |
| MIMAT0006673 | cfa-miR-574 | 8 | .g...... | 1 | 87 |
| MIMAT0004894 | mmu-miR-574-3p | 8 | .g...... | 1 | 87 |
| MIMAT0003239 | hsa-miR-574-3p | 8 | .g...... | 1 | 87 |
| MIMAT0036791 | oha-miR-199b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035417 | nve-miR-9456 | 7 | ......__ | 2 | 75 |
| MIMAT0035278 | gsa-miR-10a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0034110 | gra-miR7486j | 3 | ......__ | 8 | 75 |
| MIMAT0034006 | gra-miR8648 | 3 | ......__ | 8 | 75 |
| MIMAT0033756 | pxy-miR-8518 | 7 | ......__ | 2 | 75 |
| MIMAT0033597 | sma-miR-8444-3p | 8 | _......_ | 3 | 75 |
| MIMAT0033290 | ppc-miR-8362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032884 | ppc-miR-8223-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031416 | mmu-miR-8110 | 2 | __...... | 7 | 75 |
| MIMAT0031225 | stu-miR8046-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030960 | stu-miR7122-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028808 | mdo-miR-7376-5p | 2 | __...... | 7 | 75 |
| MIMAT0028736 | mdo-miR-7362-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028188 | dev-miR-D15-3p | 3 | __...... | 8 | 75 |
| MIMAT0027606 | hsa-miR-6853-5p | 1 | __...... | 6 | 75 |
| MIMAT0027551 | hsa-miR-6825-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025863 | blv-miR-B3-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022314 | cel-miR-5595-3p | 3 | __...... | 8 | 75 |
| MIMAT0021494 | asu-miR-100d-3p | 6 | __...... | 1 | 75 |
| MIMAT0020576 | bdi-miR5067 | 1 | ......__ | 6 | 75 |
| MIMAT0020137 | cel-miR-4931 | 7 | ......__ | 2 | 75 |
| MIMAT0019624 | pma-miR-4591 | 1 | ......__ | 6 | 75 |
| MIMAT0018314 | gma-miR4398 | 3 | ......__ | 8 | 75 |
| MIMAT0018254 | gma-miR4387c | 1 | __...... | 6 | 75 |
| MIMAT0018589 | ame-miR-3723 | 2 | _......_ | 7 | 75 |
| MIMAT0017387 | csi-miR172a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012421 | dps-miR-2575-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012280 | dps-miR-986-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007394 | gma-miR1532 | 8 | __...... | 3 | 75 |
| MIMAT0004393 | cre-miR910 | 3 | _......_ | 8 | 75 |
