| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcaggaag | 8 | ||
| MIMAT0004452 | mdv2-miR-M14-3p | 1 | ........ | 8 | 100 |
| MIMAT0037258 | ata-miR2118d-3p | 7 | ......._ | 1 | 87 |
| MIMAT0037114 | ata-miR2118c-3p | 7 | ......._ | 1 | 87 |
| MIMAT0037077 | ssc-miR-9858-5p | 7 | ......._ | 1 | 87 |
| MIMAT0035532 | bdi-miR2118b | 7 | ......._ | 1 | 87 |
| MIMAT0028360 | mml-miR-7198-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028303 | mml-miR-7179-3p | 1 | ......._ | 7 | 87 |
| MIMAT0026427 | sbi-miR2118-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027652 | hsa-miR-6876-5p | 1 | _....... | 7 | 87 |
| MIMAT0022665 | ola-miR-459-3p | 1 | _....... | 7 | 87 |
| MIMAT0020290 | ssp-miR1432 | 2 | ......._ | 8 | 87 |
| MIMAT0019003 | hsa-miR-4476 | 1 | _....... | 7 | 87 |
| MIMAT0013713 | bmo-miR-2805 | 7 | ......._ | 1 | 87 |
| MIMAT0011766 | zma-miR2118g | 7 | ......._ | 1 | 87 |
| MIMAT0011764 | zma-miR2118e | 7 | ......._ | 1 | 87 |
| MIMAT0011763 | zma-miR2118d | 7 | ......._ | 1 | 87 |
| MIMAT0011760 | zma-miR2118a | 7 | ......._ | 1 | 87 |
| MIMAT0011752 | osa-miR2118m | 7 | ......._ | 1 | 87 |
| MIMAT0011750 | osa-miR2118k | 7 | ......._ | 1 | 87 |
| MIMAT0011749 | osa-miR2118j | 7 | ......._ | 1 | 87 |
| MIMAT0011747 | osa-miR2118h | 7 | ......._ | 1 | 87 |
| MIMAT0011745 | osa-miR2118f | 7 | ......._ | 1 | 87 |
| MIMAT0011743 | osa-miR2118d | 7 | ......._ | 1 | 87 |
| MIMAT0003910 | ppt-miR1219c | 7 | _....... | 1 | 87 |
| MIMAT0003909 | ppt-miR1219b | 7 | _....... | 1 | 87 |
| MIMAT0003908 | ppt-miR1219a | 7 | _....... | 1 | 87 |
| MIMAT0003470 | mmu-miR-691 | 8 | ......._ | 2 | 87 |
| MIMAT0001889 | dre-miR-461 | 1 | ......._ | 7 | 87 |
| MIMAT0030551 | prd-miR-7889-3p | 1 | .g...... | 8 | 87 |
| MIMAT0027750 | mmu-miR-6925-5p | 1 | .g...... | 8 | 87 |
| MIMAT0022062 | aca-miR-5440 | 1 | ......g. | 8 | 87 |
| MIMAT0022047 | aca-miR-5426-3p | 1 | .g...... | 8 | 87 |
| MIMAT0032110 | hsa-miR-3653-5p | 8 | ......g. | 1 | 87 |
| MIMAT0006827 | oan-miR-1334 | 1 | .t...... | 8 | 87 |
| MIMAT0037214 | ata-miR1432-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036579 | tch-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0036442 | ggo-miR-516a-3p | 8 | __...... | 3 | 75 |
| MIMAT0036375 | gma-miR9748 | 3 | __...... | 8 | 75 |
| MIMAT0036294 | chi-miR-873-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036286 | chi-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0036193 | chi-miR-378-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035968 | chi-miR-145-3p | 7 | _......_ | 2 | 75 |
| MIMAT0035617 | dvi-miR-iab-8-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035561 | dvi-miR-190-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035530 | bdi-miR1432 | 2 | ......__ | 7 | 75 |
| MIMAT0035069 | efu-miR-9328 | 8 | __...... | 3 | 75 |
| MIMAT0034889 | efu-miR-9189b | 8 | ......__ | 3 | 75 |
| MIMAT0034888 | efu-miR-9189a | 6 | ......__ | 1 | 75 |
| MIMAT0034811 | efu-miR-9219 | 3 | ......__ | 8 | 75 |
| MIMAT0034778 | efu-miR-9203b | 1 | ......__ | 6 | 75 |
| MIMAT0034681 | eca-miR-9130 | 6 | __...... | 1 | 75 |
| MIMAT0034627 | eca-miR-9082 | 8 | __...... | 3 | 75 |
| MIMAT0034561 | eca-miR-9020 | 2 | __...... | 7 | 75 |
| MIMAT0034508 | eca-miR-8971 | 6 | ......__ | 1 | 75 |
| MIMAT0034447 | eca-miR-8919 | 2 | ......__ | 7 | 75 |
| MIMAT0034408 | cfa-miR-8898 | 1 | ......__ | 6 | 75 |
| MIMAT0034373 | cfa-miR-8873a | 6 | ......__ | 1 | 75 |
| MIMAT0033891 | atr-miR8602 | 1 | ......__ | 6 | 75 |
| MIMAT0033545 | sma-miR-8420-3p | 2 | __...... | 7 | 75 |
| MIMAT0033426 | str-miR-7880w-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032734 | ssa-miR-8156-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032459 | ssa-miR-196b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032370 | ssa-miR-145-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031843 | cpa-miR8146 | 1 | __...... | 6 | 75 |
| MIMAT0031633 | bbe-miR-2068-5p | 6 | __...... | 1 | 75 |
| MIMAT0031533 | ppe-miR8125 | 1 | _......_ | 6 | 75 |
| MIMAT0030711 | prd-miR-7931-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030602 | prd-miR-235-5p | 1 | __...... | 6 | 75 |
| MIMAT0030449 | bta-miR-7864 | 6 | __...... | 1 | 75 |
| MIMAT0032256 | rgl-miR7810 | 3 | __...... | 8 | 75 |
| MIMAT0030350 | hhi-miR-129b-3p | 1 | __...... | 6 | 75 |
| MIMAT0030242 | bdi-miR7751-5p | 8 | __...... | 3 | 75 |
| MIMAT0030095 | bdi-miR395p-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029809 | mmu-miR-7036b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029564 | ipu-miR-7565 | 6 | _......_ | 1 | 75 |
| MIMAT0029353 | lja-miR7530 | 7 | __...... | 2 | 75 |
| MIMAT0029128 | ghr-miR7486b | 2 | __...... | 7 | 75 |
| MIMAT0029127 | ghr-miR7486a | 2 | __...... | 7 | 75 |
| MIMAT0029116 | gga-miR-7481-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029087 | gga-miR-7466-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029029 | gga-miR-7437-3p | 6 | __...... | 1 | 75 |
| MIMAT0028720 | mdo-miR-7354-5p | 3 | __...... | 8 | 75 |
| MIMAT0028664 | mdo-miR-873-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028568 | mdo-miR-7292-5p | 2 | __...... | 7 | 75 |
| MIMAT0028526 | mdo-miR-7276-5p | 8 | __...... | 3 | 75 |
| MIMAT0028409 | mmu-miR-7220-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028324 | mml-miR-7185-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028298 | mml-miR-7177-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028297 | mml-miR-518g-3p | 1 | __...... | 6 | 75 |
| MIMAT0028234 | hsa-miR-7162-5p | 8 | __...... | 3 | 75 |
| MIMAT0028214 | hsa-miR-7152-5p | 7 | _......_ | 2 | 75 |
| MIMAT0026379 | bma-miR-5879b | 2 | _......_ | 7 | 75 |
| MIMAT0026371 | bma-miR-5872 | 3 | ......__ | 8 | 75 |
| MIMAT0028012 | mmu-miR-7054-5p | 2 | __...... | 7 | 75 |
| MIMAT0027900 | mmu-miR-6999-5p | 2 | __...... | 7 | 75 |
| MIMAT0027702 | mmu-miR-6901-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027556 | hsa-miR-6828-5p | 1 | __...... | 6 | 75 |
| MIMAT0027467 | hsa-miR-6783-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025865 | blv-miR-B5-5p | 1 | __...... | 6 | 75 |
| MIMAT0025765 | gga-miR-6664-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025381 | ssc-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0025291 | hbr-miR6482 | 1 | _......_ | 6 | 75 |
| MIMAT0025114 | mmu-miR-6370 | 2 | _......_ | 7 | 75 |
| MIMAT0024810 | hvu-miR6186 | 3 | __...... | 8 | 75 |
| MIMAT0024311 | mml-miR-873-5p | 2 | _......_ | 7 | 75 |
| MIMAT0024167 | ggo-miR-873 | 2 | _......_ | 7 | 75 |
| MIMAT0024063 | ptr-miR-3664 | 1 | ......__ | 6 | 75 |
| MIMAT0023996 | cgr-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0023990 | cgr-miR-632 | 8 | _......_ | 3 | 75 |
| MIMAT0023943 | cgr-miR-378-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023303 | osa-miR5829 | 2 | ......__ | 7 | 75 |
| MIMAT0022216 | mtr-miR5557-3p | 8 | __...... | 3 | 75 |
| MIMAT0022132 | osa-miR5499 | 3 | __...... | 8 | 75 |
| MIMAT0022038 | aca-miR-5418 | 6 | __...... | 1 | 75 |
| MIMAT0021774 | aca-miR-145-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027091 | bdi-miR395g-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020554 | bdi-miR5056 | 1 | __...... | 6 | 75 |
| MIMAT0021020 | hsa-miR-5000-3p | 1 | ......__ | 6 | 75 |
| MIMAT0020116 | bfl-miR-4872c | 3 | ......__ | 8 | 75 |
| MIMAT0019257 | oar-miR-1197-5p | 8 | __...... | 3 | 75 |
| MIMAT0018722 | tca-miR-3839-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018090 | hsa-miR-3667-3p | 8 | __...... | 3 | 75 |
| MIMAT0019220 | hsa-miR-3664-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016616 | cin-miR-4064-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016150 | ppy-miR-1200 | 7 | ......__ | 2 | 75 |
| MIMAT0016111 | ppy-miR-873 | 2 | _......_ | 7 | 75 |
| MIMAT0016096 | ppy-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0015946 | ppy-miR-516a-3p | 8 | __...... | 3 | 75 |
| MIMAT0017731 | aly-miR3448-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015505 | bmo-miR-3317 | 3 | _......_ | 8 | 75 |
| MIMAT0019208 | hsa-miR-3074-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014856 | mmu-miR-3074-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014461 | tgu-miR-2961 | 1 | __...... | 6 | 75 |
| MIMAT0014458 | tgu-miR-2959 | 6 | _......_ | 1 | 75 |
| MIMAT0014032 | zma-miR1432-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014027 | zma-miR482-3p | 7 | __...... | 2 | 75 |
| MIMAT0013120 | eca-miR-873 | 2 | _......_ | 7 | 75 |
| MIMAT0012948 | eca-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0012450 | dsi-miR-190-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012393 | dps-miR-2565-3p | 6 | _......_ | 1 | 75 |
| MIMAT0012228 | dps-miR-190-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012004 | bta-miR-2432 | 1 | ......__ | 6 | 75 |
| MIMAT0011996 | bta-miR-2426 | 2 | __...... | 7 | 75 |
| MIMAT0011754 | osa-miR2118o | 7 | ......__ | 2 | 75 |
| MIMAT0011390 | sbi-miR1432 | 2 | ......__ | 7 | 75 |
| MIMAT0009996 | bfl-miR-2068-5p | 6 | __...... | 1 | 75 |
| MIMAT0009377 | bta-miR-873 | 2 | _......_ | 7 | 75 |
| MIMAT0009365 | bta-miR-671 | 1 | __...... | 6 | 75 |
| MIMAT0032071 | dvi-miR-316-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015279 | hsv1-miR-H3-5p | 7 | ......__ | 2 | 75 |
| MIMAT0008324 | ptr-miR-873 | 2 | _......_ | 7 | 75 |
| MIMAT0008182 | ptr-miR-516a | 8 | __...... | 3 | 75 |
| MIMAT0006505 | mml-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0007450 | gga-miR-1588 | 1 | _......_ | 6 | 75 |
| MIMAT0006063 | odi-miR-1503 | 3 | __...... | 8 | 75 |
| MIMAT0006025 | odi-miR-1474 | 3 | ......__ | 8 | 75 |
| MIMAT0007336 | gga-miR-1458 | 6 | _......_ | 1 | 75 |
| MIMAT0005966 | osa-miR1432-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007272 | oan-miR-873-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007197 | oan-miR-1395-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007142 | oan-miR-145-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007064 | oan-miR-1375-5p | 8 | __...... | 3 | 75 |
| MIMAT0005863 | hsa-miR-1200 | 7 | ......__ | 2 | 75 |
| MIMAT0005593 | hsa-miR-1238-3p | 6 | __...... | 1 | 75 |
| MIMAT0005339 | rno-miR-873-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005168 | ppt-miR1051-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020848 | dme-miR-190-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004399 | cre-miR919.2 | 3 | ......__ | 8 | 75 |
| MIMAT0004953 | hsa-miR-873-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004936 | mmu-miR-873a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026710 | mdo-miR-23a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026670 | mdo-miR-145-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003911 | ppt-miR1219d | 7 | _......_ | 2 | 75 |
| MIMAT0014814 | mmu-miR-3058-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003731 | mmu-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0003880 | hsa-miR-671-5p | 1 | __...... | 6 | 75 |
| MIMAT0003378 | rno-miR-378a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006778 | hsa-miR-516a-3p | 8 | __...... | 3 | 75 |
| MIMAT0002860 | hsa-miR-516b-3p | 8 | __...... | 3 | 75 |
| MIMAT0026599 | mml-miR-23a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017185 | mghv-miR-M1-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0000742 | mmu-miR-378a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000731 | hsa-miR-378a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0020842 | dme-miR-316-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004534 | mmu-miR-145a-3p | 7 | _......_ | 2 | 75 |
