| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccacgt | 7 | ||
| MIMAT0028834 | mdo-miR-7386a-5p | 8 | ....... | 2 | 100 |
| MIMAT0025561 | bta-miR-6527 | 8 | ....... | 2 | 100 |
| MIMAT0025544 | bta-miR-3956 | 7 | ....... | 1 | 100 |
| MIMAT0024548 | cca-miR6110-3p | 2 | ....... | 8 | 100 |
| MIMAT0016663 | cin-miR-4087-3p | 7 | ....... | 1 | 100 |
| MIMAT0034475 | eca-miR-8946 | 1 | _...... | 6 | 85 |
| MIMAT0033638 | sma-miR-8460-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032882 | ppc-miR-36-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030983 | hsa-miR-8056 | 6 | ......_ | 1 | 85 |
| MIMAT0030422 | hsa-miR-7847-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028513 | mdo-miR-7271-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027435 | hsa-miR-6767-3p | 1 | _...... | 6 | 85 |
| MIMAT0023465 | hco-miR-5961 | 1 | ......_ | 6 | 85 |
| MIMAT0022456 | gma-miR5673 | 6 | ......_ | 1 | 85 |
| MIMAT0021180 | mtr-miR5223 | 6 | ......_ | 1 | 85 |
| MIMAT0021084 | hsa-miR-5092 | 3 | ......_ | 8 | 85 |
| MIMAT0019610 | pma-miR-4577 | 8 | ......_ | 3 | 85 |
| MIMAT0019290 | oar-miR-3956-5p | 8 | _...... | 3 | 85 |
| MIMAT0015562 | bmo-miR-3373-3p | 2 | _...... | 7 | 85 |
| MIMAT0014769 | api-miR-3033 | 1 | ......_ | 6 | 85 |
| MIMAT0019180 | tca-miR-263a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026915 | mml-miR-942-3p | 7 | _...... | 2 | 85 |
| MIMAT0006501 | mml-miR-662 | 3 | _...... | 8 | 85 |
| MIMAT0026862 | mml-miR-376b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007727 | gga-miR-1809 | 6 | _...... | 1 | 85 |
| MIMAT0007690 | gga-miR-1779 | 8 | _...... | 3 | 85 |
| MIMAT0015245 | cin-miR-1473-5p | 3 | _...... | 8 | 85 |
| MIMAT0006972 | oan-miR-1421e-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003325 | hsa-miR-662 | 3 | _...... | 8 | 85 |
| MIMAT0022923 | hsa-miR-376b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015137 | zma-miR164d-3p | 7 | _...... | 2 | 85 |
