| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccactt | 7 | ||
| MIMAT0037010 | ssc-miR-9792-5p | 8 | ....... | 2 | 100 |
| MIMAT0033833 | atr-miR8560 | 1 | ....... | 7 | 100 |
| MIMAT0029804 | mmu-miR-7651-5p | 7 | ....... | 1 | 100 |
| MIMAT0024935 | hme-miR-1175 | 7 | ....... | 1 | 100 |
| MIMAT0027280 | ppe-miR6263 | 7 | ....... | 1 | 100 |
| MIMAT0021533 | asu-miR-1175-5p | 7 | ....... | 1 | 100 |
| MIMAT0019940 | hsa-miR-4436b-5p | 2 | ....... | 8 | 100 |
| MIMAT0018818 | tca-miR-1175-5p | 7 | ....... | 1 | 100 |
| MIMAT0014390 | cqu-miR-1175-5p | 7 | ....... | 1 | 100 |
| MIMAT0014264 | aae-miR-1175-5p | 7 | ....... | 1 | 100 |
| MIMAT0013612 | bmo-miR-1175-5p | 7 | ....... | 1 | 100 |
| MIMAT0001583 | hcmv-miR-US25-2-3p | 2 | ....... | 8 | 100 |
| MIMAT0036782 | oha-miR-194-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036211 | chi-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0035556 | dvi-miR-1010-5p | 8 | _...... | 3 | 85 |
| MIMAT0035300 | gsa-miR-1993-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035219 | dme-miR-9378-5p | 6 | ......_ | 1 | 85 |
| MIMAT0034907 | efu-miR-9186p | 7 | _...... | 2 | 85 |
| MIMAT0034349 | cfa-miR-8854 | 1 | ......_ | 6 | 85 |
| MIMAT0034199 | gra-miR8765 | 8 | ......_ | 3 | 85 |
| MIMAT0034051 | gra-miR8680 | 8 | ......_ | 3 | 85 |
| MIMAT0034008 | gra-miR8650 | 6 | ......_ | 1 | 85 |
| MIMAT0032952 | ppc-miR-2235d-5p | 1 | _...... | 6 | 85 |
| MIMAT0032452 | ssa-miR-194c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032450 | ssa-miR-194b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032448 | ssa-miR-194a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0031829 | cpa-miR8136 | 8 | _...... | 3 | 85 |
| MIMAT0030680 | prd-miR-40-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030604 | prd-miR-4816-5p | 8 | _...... | 3 | 85 |
| MIMAT0030541 | prd-miR-360-3p | 1 | _...... | 6 | 85 |
| MIMAT0030369 | ptc-miR6476c | 8 | ......_ | 3 | 85 |
| MIMAT0030368 | ptc-miR6476b | 8 | ......_ | 3 | 85 |
| MIMAT0032240 | rgl-miR7799 | 6 | ......_ | 1 | 85 |
| MIMAT0029978 | mtr-miR172d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028697 | mdo-miR-7343-3p | 1 | _...... | 6 | 85 |
| MIMAT0028417 | mmu-miR-7224-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026373 | bma-miR-5874 | 1 | ......_ | 6 | 85 |
| MIMAT0028082 | mmu-miR-7088-5p | 8 | _...... | 3 | 85 |
| MIMAT0027881 | mmu-miR-6989-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027851 | mmu-miR-6974-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027798 | mmu-miR-6949-5p | 7 | _...... | 2 | 85 |
| MIMAT0027455 | hsa-miR-6777-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025308 | prv-miR-LLT5 | 8 | ......_ | 3 | 85 |
| MIMAT0025217 | ptc-miR6476a | 8 | ......_ | 3 | 85 |
| MIMAT0027302 | ppe-miR6275 | 6 | ......_ | 1 | 85 |
| MIMAT0024855 | rno-miR-378b | 6 | ......_ | 1 | 85 |
| MIMAT0024399 | ppy-miR-4796 | 8 | _...... | 3 | 85 |
| MIMAT0024341 | mml-miR-4796-3p | 6 | _...... | 1 | 85 |
| MIMAT0022623 | ola-miR-194-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022324 | cin-miR-5600-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022177 | osa-miR5541 | 8 | _...... | 3 | 85 |
| MIMAT0021830 | aca-miR-194-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021829 | aca-miR-194-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021606 | gma-miR5037c | 6 | ......_ | 1 | 85 |
| MIMAT0021439 | asu-miR-36a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021294 | mtr-miR5269b | 7 | _...... | 2 | 85 |
| MIMAT0021293 | mtr-miR5269a | 7 | _...... | 2 | 85 |
| MIMAT0020709 | bdi-miR5167a-5p | 1 | _...... | 6 | 85 |
| MIMAT0020570 | bdi-miR5063 | 1 | ......_ | 6 | 85 |
| MIMAT0021075 | gma-miR5044 | 8 | ......_ | 3 | 85 |
| MIMAT0020005 | cel-miR-4816-5p | 8 | _...... | 3 | 85 |
| MIMAT0019978 | hsa-miR-4800-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019971 | hsa-miR-4796-3p | 8 | _...... | 3 | 85 |
| MIMAT0019968 | hsa-miR-4795-5p | 8 | _...... | 3 | 85 |
| MIMAT0019584 | pma-miR-4552 | 3 | _...... | 8 | 85 |
| MIMAT0019333 | oar-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0018779 | tca-miR-3851d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0018137 | pab-miR3705 | 8 | _...... | 3 | 85 |
| MIMAT0018120 | hsa-miR-3691-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017992 | hsa-miR-3614-5p | 1 | _...... | 6 | 85 |
| MIMAT0017951 | ssc-miR-194b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0014797 | api-miR-3054 | 8 | ......_ | 3 | 85 |
| MIMAT0014681 | hma-miR-3012b | 8 | ......_ | 3 | 85 |
| MIMAT0014680 | hma-miR-3012a | 8 | ......_ | 3 | 85 |
| MIMAT0027001 | tgu-miR-194-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013579 | cte-miR-2710 | 1 | ......_ | 6 | 85 |
| MIMAT0012463 | dsi-miR-1010-5p | 8 | _...... | 3 | 85 |
| MIMAT0012324 | dps-miR-2535-5p | 8 | _...... | 3 | 85 |
| MIMAT0012273 | dps-miR-1010-5p | 8 | _...... | 3 | 85 |
| MIMAT0011440 | cel-miR-2212-3p | 6 | _...... | 1 | 85 |
| MIMAT0011308 | dre-miR-2186 | 6 | _...... | 1 | 85 |
| MIMAT0009602 | lgi-miR-1175-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009549 | cte-miR-1175-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009422 | mmu-miR-1951 | 8 | ......_ | 3 | 85 |
| MIMAT0007831 | osa-miR1876 | 8 | _...... | 3 | 85 |
| MIMAT0015246 | cin-miR-1497-5p | 2 | _...... | 7 | 85 |
| MIMAT0007068 | oan-miR-1421l-5p | 6 | _...... | 1 | 85 |
| MIMAT0007018 | oan-miR-194-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022725 | hsa-miR-1255b-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0020905 | dme-miR-1010-5p | 7 | _...... | 2 | 85 |
| MIMAT0016999 | mmu-miR-194-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020307 | cel-miR-40-5p | 6 | ......_ | 1 | 85 |
