| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccatgc | 7 | ||
| MIMAT0034731 | eca-miR-9155 | 1 | ....... | 7 | 100 |
| MIMAT0033085 | ppc-miR-8288-5p | 7 | ....... | 1 | 100 |
| MIMAT0028197 | dev-miR-D21-3p | 2 | ....... | 8 | 100 |
| MIMAT0022276 | hsa-miR-5581-3p | 2 | ....... | 8 | 100 |
| MIMAT0005985 | mdv1-miR-M13 | 7 | ....... | 1 | 100 |
| MIMAT0035862 | bra-miR6032-5p | 8 | ......_ | 3 | 85 |
| MIMAT0034858 | efu-miR-9243a | 3 | ......_ | 8 | 85 |
| MIMAT0034494 | eca-miR-8960 | 1 | _...... | 6 | 85 |
| MIMAT0034377 | cfa-miR-8877 | 1 | _...... | 6 | 85 |
| MIMAT0033972 | esi-miR8623b | 6 | ......_ | 1 | 85 |
| MIMAT0033657 | sma-miR-8469-5p | 7 | _...... | 2 | 85 |
| MIMAT0033283 | ppc-miR-8360-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032377 | ssa-miR-146d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030479 | prd-miR-72-3p | 2 | _...... | 7 | 85 |
| MIMAT0029915 | mdo-miR-7301-3p | 1 | _...... | 6 | 85 |
| MIMAT0029574 | ipu-miR-7575 | 6 | _...... | 1 | 85 |
| MIMAT0029120 | gga-miR-7483-5p | 6 | _...... | 1 | 85 |
| MIMAT0028862 | mdo-miR-7386m-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028432 | mmu-miR-7232-5p | 8 | ......_ | 3 | 85 |
| MIMAT0026426 | sbi-miR2118-5p | 7 | _...... | 2 | 85 |
| MIMAT0027645 | hsa-miR-6872-3p | 2 | _...... | 7 | 85 |
| MIMAT0025759 | gga-miR-6658-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025215 | ptc-miR6425d-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025215 | ptc-miR6425d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025208 | ptc-miR6425c-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025208 | ptc-miR6425c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025199 | ptc-miR6425b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025199 | ptc-miR6425b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025191 | ptc-miR6425a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025191 | ptc-miR6425a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022453 | gma-miR5671a | 6 | ......_ | 1 | 85 |
| MIMAT0022391 | ath-miR5020c | 8 | _...... | 3 | 85 |
| MIMAT0021232 | mtr-miR482-5p | 7 | _...... | 2 | 85 |
| MIMAT0021141 | mtr-miR5208c | 8 | ......_ | 3 | 85 |
| MIMAT0021140 | mtr-miR5208b | 8 | ......_ | 3 | 85 |
| MIMAT0021139 | mtr-miR5208a | 8 | ......_ | 3 | 85 |
| MIMAT0021046 | hsa-miR-5011-3p | 8 | _...... | 3 | 85 |
| MIMAT0019982 | hsa-miR-4802-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019826 | hsa-miR-4716-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018388 | ngi-miR-281 | 8 | ......_ | 3 | 85 |
| MIMAT0018005 | hsa-miR-3622b-5p | 8 | _...... | 3 | 85 |
| MIMAT0015565 | bmo-miR-3375-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015511 | bmo-miR-3324 | 1 | ......_ | 6 | 85 |
| MIMAT0014465 | tgu-miR-146a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009753 | aqu-miR-2021-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032082 | dvi-miR-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0007736 | gga-miR-146c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007495 | gga-miR-1626-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007480 | gga-miR-1614-5p | 7 | _...... | 2 | 85 |
| MIMAT0005841 | mmu-miR-669h-5p | 8 | _...... | 3 | 85 |
| MIMAT0003149 | ppt-miR538c | 8 | _...... | 3 | 85 |
| MIMAT0003148 | ppt-miR538b | 8 | _...... | 3 | 85 |
| MIMAT0003147 | ppt-miR538a | 8 | _...... | 3 | 85 |
| MIMAT0020779 | dme-miR-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0015099 | cel-miR-51-3p | 6 | ......_ | 1 | 85 |
