| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccgaacg | 8 | ||
| MIMAT0004755 | hcmv-miR-US25-1-3p | 1 | ........ | 8 | 100 |
| MIMAT0030928 | stu-miR7984d-5p | 2 | ......._ | 8 | 87 |
| MIMAT0025845 | hsa-miR-6716-3p | 1 | ......._ | 7 | 87 |
| MIMAT0037295 | ame-miR-9890 | 6 | ......__ | 1 | 75 |
| MIMAT0035764 | tae-miR9654b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035753 | bfv-miR-BF1-5p | 6 | ......__ | 1 | 75 |
| MIMAT0034402 | cfa-miR-8894 | 1 | ......__ | 6 | 75 |
| MIMAT0033830 | atr-miR8558a | 3 | ......__ | 8 | 75 |
| MIMAT0032381 | ssa-miR-148b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030386 | ptc-miR1444e | 1 | __...... | 6 | 75 |
| MIMAT0030385 | ptc-miR1444d | 1 | __...... | 6 | 75 |
| MIMAT0027272 | ppe-miR482a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022136 | osa-miR5503 | 6 | ......__ | 1 | 75 |
| MIMAT0022022 | aca-miR-5407-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019668 | osa-miR812m | 2 | __...... | 7 | 75 |
| MIMAT0019667 | osa-miR812l | 2 | __...... | 7 | 75 |
| MIMAT0019666 | osa-miR812k | 2 | __...... | 7 | 75 |
| MIMAT0018316 | gma-miR4400 | 6 | ......__ | 1 | 75 |
| MIMAT0018777 | tca-miR-3049-3p | 8 | __...... | 3 | 75 |
| MIMAT0018138 | pab-miR3706 | 7 | ......__ | 2 | 75 |
| MIMAT0016599 | cin-miR-4055-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016389 | gga-miR-3538 | 6 | _......_ | 1 | 75 |
| MIMAT0017778 | esi-miR3462-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015520 | bmo-miR-3333 | 7 | __...... | 2 | 75 |
| MIMAT0014875 | mmu-miR-3083-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014674 | hma-miR-3007-5p | 7 | _......_ | 2 | 75 |
| MIMAT0012711 | hvt-miR-H2 | 8 | __...... | 3 | 75 |
| MIMAT0026759 | oan-miR-1395-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005535 | mcmv-miR-m01-2-3p | 6 | __...... | 1 | 75 |
| MIMAT0005262 | smo-miR1105 | 6 | ......__ | 1 | 75 |
