| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccgcgct | 8 | ||
| MIMAT0022682 | hvsa-miR-HSUR5-5p | 1 | ........ | 8 | 100 |
| MIMAT0030744 | prd-miR-7942-5p | 8 | ......._ | 2 | 87 |
| MIMAT0016137 | ppy-miR-937 | 2 | ......._ | 8 | 87 |
| MIMAT0013861 | bta-miR-2903 | 2 | ......._ | 8 | 87 |
| MIMAT0017352 | hsa-miR-2277-5p | 7 | _....... | 1 | 87 |
| MIMAT0008344 | ptr-miR-937 | 2 | ......._ | 8 | 87 |
| MIMAT0004980 | hsa-miR-937-3p | 2 | ......._ | 8 | 87 |
| MIMAT0030796 | prd-miR-7955-5p | 8 | .a...... | 1 | 87 |
| MIMAT0037029 | ssc-miR-9811-5p | 1 | __...... | 6 | 75 |
| MIMAT0035797 | tae-miR5384-3p | 8 | __...... | 3 | 75 |
| MIMAT0034766 | eca-miR-9185 | 2 | ......__ | 7 | 75 |
| MIMAT0034529 | eca-miR-8992 | 1 | __...... | 6 | 75 |
| MIMAT0033659 | sma-miR-8470-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033225 | ppc-miR-8340-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030742 | prd-miR-7941-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031133 | aja-miR-1893 | 7 | _......_ | 2 | 75 |
| MIMAT0029108 | gga-miR-7477-5p | 8 | __...... | 3 | 75 |
| MIMAT0029064 | gga-miR-7455-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028621 | mdo-miR-7311-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028185 | dev-miR-D12-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027639 | hsa-miR-6869-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025566 | bta-miR-6530 | 6 | ......__ | 1 | 75 |
| MIMAT0020171 | dme-miR-4955-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019613 | pma-miR-4580 | 3 | ......__ | 8 | 75 |
| MIMAT0019011 | hsa-miR-4479 | 7 | _......_ | 2 | 75 |
| MIMAT0018563 | ame-miR-3784 | 7 | ......__ | 2 | 75 |
| MIMAT0018514 | ame-miR-3746 | 6 | ......__ | 1 | 75 |
| MIMAT0016373 | gga-miR-3523 | 1 | _......_ | 6 | 75 |
| MIMAT0014708 | hsv2-miR-H25 | 8 | _......_ | 3 | 75 |
| MIMAT0014208 | aae-miR-275-5p | 1 | __...... | 6 | 75 |
| MIMAT0013053 | eca-miR-675 | 8 | _......_ | 3 | 75 |
| MIMAT0032091 | dvi-miR-275-5p | 1 | __...... | 6 | 75 |
| MIMAT0007879 | mmu-miR-1893 | 7 | _......_ | 2 | 75 |
| MIMAT0006966 | oan-miR-1421b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004413 | rrv-miR-rR1-6-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015231 | bmo-miR-275-5p | 1 | __...... | 6 | 75 |
| MIMAT0020801 | dme-miR-275-5p | 1 | __...... | 6 | 75 |
