| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccgtgcg | 8 | ||
| MIMAT0025040 | sma-miR-3492 | 2 | ......._ | 8 | 87 |
| MIMAT0018679 | tca-miR-3825-3p | 2 | _....... | 8 | 87 |
| MIMAT0016301 | sja-miR-3492 | 2 | ......._ | 8 | 87 |
| MIMAT0007527 | gga-miR-1649-3p | 2 | ......._ | 8 | 87 |
| MIMAT0005425 | cre-miR1168.2 | 8 | ......._ | 2 | 87 |
| MIMAT0019640 | pma-miR-4606 | 1 | .g...... | 8 | 87 |
| MIMAT0005358 | tae-miR1123 | 1 | ......a. | 8 | 87 |
| MIMAT0037213 | ata-miR164a-3p | 3 | __...... | 8 | 75 |
| MIMAT0035905 | chi-miR-105b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0034747 | eca-miR-9169 | 6 | _......_ | 1 | 75 |
| MIMAT0034674 | eca-miR-1379 | 6 | _......_ | 1 | 75 |
| MIMAT0034443 | eca-miR-8915 | 8 | _......_ | 3 | 75 |
| MIMAT0033870 | atr-miR8552d | 1 | ......__ | 6 | 75 |
| MIMAT0031398 | mmu-miR-8096 | 8 | _......_ | 3 | 75 |
| MIMAT0029886 | mmu-miR-7683-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028356 | mml-miR-7197-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028336 | mml-miR-7189-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026440 | sbi-miR6231-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027912 | mmu-miR-7004-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027715 | mmu-miR-6907-3p | 3 | __...... | 8 | 75 |
| MIMAT0025698 | gga-miR-6604-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025633 | gga-miR-6564-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025536 | bta-miR-6518 | 7 | ......__ | 2 | 75 |
| MIMAT0025240 | ptc-miR6437a | 7 | ......__ | 2 | 75 |
| MIMAT0025225 | ptc-miR6437b | 7 | ......__ | 2 | 75 |
| MIMAT0024801 | hvu-miR6178 | 6 | ......__ | 1 | 75 |
| MIMAT0021469 | asu-miR-72-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021327 | mtr-miR5283 | 1 | __...... | 6 | 75 |
| MIMAT0027044 | bdi-miR160a-3p | 2 | __...... | 7 | 75 |
| MIMAT0019638 | pma-miR-4604 | 2 | __...... | 7 | 75 |
| MIMAT0019594 | pma-miR-4562 | 1 | __...... | 6 | 75 |
| MIMAT0018365 | far-miR1119 | 8 | _......_ | 3 | 75 |
| MIMAT0018726 | tca-miR-3841-5p | 1 | __...... | 6 | 75 |
| MIMAT0017982 | hsa-miR-3605-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016807 | cin-miR-4189-5p | 2 | __...... | 7 | 75 |
| MIMAT0016799 | cin-miR-4183-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016659 | cin-miR-4085-5p | 7 | __...... | 2 | 75 |
| MIMAT0016009 | ppy-miR-564 | 8 | _......_ | 3 | 75 |
| MIMAT0015550 | bmo-miR-3364 | 2 | ......__ | 7 | 75 |
| MIMAT0015054 | hsa-miR-3177-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014769 | api-miR-3033 | 8 | ......__ | 3 | 75 |
| MIMAT0014049 | osa-miR2918 | 2 | ......__ | 7 | 75 |
| MIMAT0015318 | zma-miR164f-3p | 3 | __...... | 8 | 75 |
| MIMAT0012212 | dme-miR-2499-5p | 1 | __...... | 6 | 75 |
| MIMAT0010204 | hsv2-miR-H4-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009448 | hsa-miR-1973 | 2 | _......_ | 7 | 75 |
| MIMAT0008398 | hsv1-miR-H2-5p | 7 | __...... | 2 | 75 |
| MIMAT0019111 | tca-miR-92a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019092 | tca-miR-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0008243 | ptr-miR-564 | 8 | _......_ | 3 | 75 |
| MIMAT0007820 | osa-miR1868 | 7 | ......__ | 2 | 75 |
| MIMAT0007634 | gga-miR-1732 | 3 | _......_ | 8 | 75 |
| MIMAT0005354 | tae-miR1119 | 8 | _......_ | 3 | 75 |
| MIMAT0004416 | rrv-miR-rR1-7-3p | 6 | __...... | 1 | 75 |
| MIMAT0017274 | mmu-miR-466h-3p | 8 | __...... | 3 | 75 |
| MIMAT0015222 | bmo-miR-1a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003228 | hsa-miR-564 | 8 | _......_ | 3 | 75 |
| MIMAT0015209 | zma-miR160f-3p | 2 | __...... | 7 | 75 |
| MIMAT0015134 | zma-miR160d-3p | 2 | __...... | 7 | 75 |
| MIMAT0022867 | osa-miR160e-3p | 2 | __...... | 7 | 75 |
| MIMAT0022854 | osa-miR160d-3p | 2 | __...... | 7 | 75 |
