| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgacgg | 7 | ||
| MIMAT0017765 | esi-miR3461-5p | 1 | ....... | 7 | 100 |
| MIMAT0033613 | sma-miR-8451-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032420 | ssa-miR-181a-3-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030620 | prd-miR-7904-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030596 | prd-miR-7966a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030238 | bdi-miR7749-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025297 | mja-miR-6489-3p | 1 | _...... | 6 | 85 |
| MIMAT0025015 | hme-miR-6308-3p | 1 | _...... | 6 | 85 |
| MIMAT0024857 | mmu-miR-6236 | 7 | _...... | 2 | 85 |
| MIMAT0024737 | nta-miR6148a | 8 | ......_ | 3 | 85 |
| MIMAT0023669 | ame-miR-6046 | 1 | ......_ | 6 | 85 |
| MIMAT0021650 | gma-miR169j-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021545 | asu-miR-5347-3p | 1 | _...... | 6 | 85 |
| MIMAT0019677 | osa-miR3980b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019675 | osa-miR3980a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018649 | tca-miR-3813-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015387 | bmo-miR-3208 | 6 | ......_ | 1 | 85 |
| MIMAT0013850 | bta-miR-2892 | 3 | _...... | 8 | 85 |
| MIMAT0012713 | hvt-miR-H3-3p | 3 | _...... | 8 | 85 |
| MIMAT0012315 | dps-miR-2526-3p | 7 | _...... | 2 | 85 |
| MIMAT0007949 | ptr-miR-1181 | 6 | _...... | 1 | 85 |
| MIMAT0007414 | gga-miR-1557 | 7 | _...... | 2 | 85 |
| MIMAT0005826 | hsa-miR-1181 | 6 | _...... | 1 | 85 |
