| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgaggac | 8 | ||
| MIMAT0033047 | ppc-miR-8274-5p | 1 | ........ | 8 | 100 |
| MIMAT0021182 | mtr-miR5224a | 1 | ........ | 8 | 100 |
| MIMAT0014996 | hsa-miR-3131 | 1 | ........ | 8 | 100 |
| MIMAT0035981 | chi-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0031385 | aly-miR2111c-3p | 7 | _....... | 1 | 87 |
| MIMAT0025312 | prv-miR-LLT9 | 2 | ......._ | 8 | 87 |
| MIMAT0024107 | ggo-miR-151a | 1 | ......._ | 7 | 87 |
| MIMAT0023782 | cgr-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0023260 | osa-miR5793 | 1 | _....... | 7 | 87 |
| MIMAT0016369 | bra-miR2111a-3p | 7 | _....... | 1 | 87 |
| MIMAT0016296 | sja-miR-3487 | 7 | ......._ | 1 | 87 |
| MIMAT0016052 | ppy-miR-611 | 2 | _....... | 8 | 87 |
| MIMAT0015775 | ppy-miR-151a-5p | 1 | ......._ | 7 | 87 |
| MIMAT0017658 | aly-miR2111a-3p | 7 | _....... | 1 | 87 |
| MIMAT0013882 | ssc-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0013004 | eca-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0026928 | mtr-miR2111m-3p | 7 | _....... | 1 | 87 |
| MIMAT0011783 | bna-miR2111a-3p | 7 | _....... | 1 | 87 |
| MIMAT0011151 | ath-miR2111a-3p | 7 | _....... | 1 | 87 |
| MIMAT0006615 | cfa-miR-151 | 1 | ......._ | 7 | 87 |
| MIMAT0006463 | mml-miR-611 | 2 | _....... | 8 | 87 |
| MIMAT0006212 | mml-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0003523 | bta-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0010214 | hsa-miR-151b | 1 | ......._ | 7 | 87 |
| MIMAT0003279 | hsa-miR-611 | 2 | _....... | 8 | 87 |
| MIMAT0001567 | mghv-miR-M1-4-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004697 | hsa-miR-151a-5p | 1 | ......._ | 7 | 87 |
| MIMAT0000613 | rno-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004536 | mmu-miR-151-5p | 1 | ......._ | 7 | 87 |
| MIMAT0033167 | ppc-miR-8315-5p | 8 | .t...... | 1 | 87 |
| MIMAT0023164 | gma-miR5767 | 1 | .g...... | 8 | 87 |
| MIMAT0019781 | hsa-miR-4691-5p | 8 | .g...... | 1 | 87 |
| MIMAT0037266 | ame-miR-9864 | 3 | ......__ | 8 | 75 |
| MIMAT0035919 | chi-miR-1224 | 3 | __...... | 8 | 75 |
| MIMAT0034866 | efu-miR-9249 | 2 | __...... | 7 | 75 |
| MIMAT0034724 | eca-miR-9148 | 2 | __...... | 7 | 75 |
| MIMAT0034476 | eca-miR-8947 | 1 | _......_ | 6 | 75 |
| MIMAT0034281 | cfa-miR-8791a | 6 | _......_ | 1 | 75 |
| MIMAT0032928 | ppc-miR-8237-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032842 | cel-miR-8211-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032831 | cel-miR-8207-5p | 8 | __...... | 3 | 75 |
| MIMAT0030627 | prd-miR-7907a-3p | 1 | __...... | 6 | 75 |
| MIMAT0030562 | prd-miR-7911c-5p | 6 | __...... | 1 | 75 |
| MIMAT0029650 | cbn-miR-7579 | 2 | __...... | 7 | 75 |
| MIMAT0029610 | crm-miR-7579 | 2 | __...... | 7 | 75 |
| MIMAT0029580 | cbr-miR-7579 | 2 | __...... | 7 | 75 |
| MIMAT0028376 | mml-miR-7205-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028219 | hsa-miR-7154-3p | 3 | __...... | 8 | 75 |
| MIMAT0028152 | ssc-miR-7138-3p | 1 | __...... | 6 | 75 |
| MIMAT0027977 | mmu-miR-7036a-3p | 8 | __...... | 3 | 75 |
| MIMAT0027605 | hsa-miR-6852-3p | 7 | __...... | 2 | 75 |
| MIMAT0027331 | ppe-miR6295 | 1 | __...... | 6 | 75 |
| MIMAT0024815 | hvu-miR6190 | 1 | _......_ | 6 | 75 |
| MIMAT0024810 | hvu-miR6186 | 1 | _......_ | 6 | 75 |
| MIMAT0024339 | mml-miR-1304 | 2 | ......__ | 7 | 75 |
| MIMAT0023447 | hco-miR-5945-3p | 1 | __...... | 6 | 75 |
| MIMAT0022410 | ath-miR5646 | 3 | ......__ | 8 | 75 |
| MIMAT0021351 | mtr-miR5289b | 1 | _......_ | 6 | 75 |
| MIMAT0021350 | mtr-miR5289a | 1 | _......_ | 6 | 75 |
| MIMAT0021142 | mtr-miR5209 | 1 | _......_ | 6 | 75 |
| MIMAT0027080 | bdi-miR5172-5p | 1 | _......_ | 6 | 75 |
| MIMAT0021027 | hsa-miR-5004-5p | 2 | __...... | 7 | 75 |
| MIMAT0020148 | dme-miR-4941-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019888 | hsa-miR-4751 | 2 | __...... | 7 | 75 |
| MIMAT0018477 | csi-miR477c | 8 | ......__ | 3 | 75 |
| MIMAT0018183 | hsa-miR-3909 | 7 | __...... | 2 | 75 |
| MIMAT0018832 | tca-miR-3870-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018807 | tca-miR-252b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017849 | rno-miR-3569 | 2 | __...... | 7 | 75 |
| MIMAT0016371 | bra-miR2111b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016365 | vvi-miR2111-3p | 6 | __...... | 1 | 75 |
| MIMAT0016284 | sja-miR-3482-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016224 | ppy-miR-1304 | 2 | ......__ | 7 | 75 |
| MIMAT0016158 | ppy-miR-1224-5p | 3 | __...... | 8 | 75 |
| MIMAT0017660 | aly-miR2111b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015519 | bmo-miR-3332 | 6 | _......_ | 1 | 75 |
| MIMAT0015387 | bmo-miR-3208 | 3 | ......__ | 8 | 75 |
| MIMAT0014869 | mmu-miR-3080-3p | 6 | _......_ | 1 | 75 |
| MIMAT0012827 | rno-miR-1224 | 3 | __...... | 8 | 75 |
| MIMAT0013556 | cte-miR-2695 | 1 | __...... | 6 | 75 |
| MIMAT0013514 | mtr-miR2680e | 6 | _......_ | 1 | 75 |
| MIMAT0013513 | mtr-miR2680d | 6 | _......_ | 1 | 75 |
| MIMAT0013512 | mtr-miR2680c | 6 | _......_ | 1 | 75 |
| MIMAT0013511 | mtr-miR2680b | 6 | _......_ | 1 | 75 |
| MIMAT0013510 | mtr-miR2680a | 6 | _......_ | 1 | 75 |
| MIMAT0013251 | mtr-miR2586a | 1 | _......_ | 6 | 75 |
| MIMAT0011941 | bta-miR-2388-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011781 | bna-miR2111b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011153 | ath-miR2111b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009944 | bta-miR-1224 | 3 | __...... | 8 | 75 |
| MIMAT0009789 | nve-miR-2033-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007657 | gga-miR-1750 | 2 | __...... | 7 | 75 |
| MIMAT0007586 | gga-miR-1694 | 2 | __...... | 7 | 75 |
| MIMAT0007555 | gga-miR-1671 | 3 | __...... | 8 | 75 |
| MIMAT0006063 | odi-miR-1503 | 1 | _......_ | 6 | 75 |
| MIMAT0007307 | oan-miR-1421aj-5p | 3 | __...... | 8 | 75 |
| MIMAT0007303 | oan-miR-1421ah-5p | 3 | __...... | 8 | 75 |
| MIMAT0007257 | oan-miR-1421ac-5p | 3 | __...... | 8 | 75 |
| MIMAT0006917 | oan-miR-1345 | 3 | _......_ | 8 | 75 |
| MIMAT0005593 | hsa-miR-1238-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005570 | mml-miR-1224-5p | 3 | __...... | 8 | 75 |
| MIMAT0005568 | ptr-miR-1224-5p | 3 | __...... | 8 | 75 |
| MIMAT0005537 | mcmv-miR-m01-3-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004862 | mmu-miR-877-3p | 7 | __...... | 2 | 75 |
| MIMAT0014802 | mmu-miR-1264-5p | 8 | __...... | 3 | 75 |
| MIMAT0005460 | mmu-miR-1224-5p | 3 | __...... | 8 | 75 |
| MIMAT0005458 | hsa-miR-1224-5p | 3 | __...... | 8 | 75 |
| MIMAT0001578 | hcmv-miR-UL148D | 8 | __...... | 3 | 75 |
| MIMAT0020916 | osa-miR169f.2 | 2 | __...... | 7 | 75 |
| MIMAT0001003 | ath-miR402 | 2 | ......__ | 7 | 75 |
| MIMAT0015116 | cel-miR-240-5p | 1 | _......_ | 6 | 75 |
