| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcggggg | 7 | ||
| MIMAT0034826 | efu-miR-9224 | 8 | ....... | 2 | 100 |
| MIMAT0028127 | mmu-miR-7115-5p | 1 | ....... | 7 | 100 |
| MIMAT0007867 | mmu-miR-1895 | 7 | ....... | 1 | 100 |
| MIMAT0037273 | ame-miR-9869 | 1 | ......_ | 6 | 85 |
| MIMAT0036272 | chi-miR-542-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035713 | bhv5-miR-B11 | 2 | _...... | 7 | 85 |
| MIMAT0035711 | bhv5-miR-B14 | 1 | _...... | 6 | 85 |
| MIMAT0034798 | efu-miR-9208 | 8 | _...... | 3 | 85 |
| MIMAT0034786 | efu-miR-9200b | 3 | _...... | 8 | 85 |
| MIMAT0030648 | prd-miR-7911b-5p | 8 | _...... | 3 | 85 |
| MIMAT0030646 | prd-miR-7911a-5p | 8 | _...... | 3 | 85 |
| MIMAT0028149 | ssc-miR-7137-5p | 1 | _...... | 6 | 85 |
| MIMAT0028072 | mmu-miR-7083-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027678 | hsa-miR-6889-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027582 | hsa-miR-6840-5p | 7 | _...... | 2 | 85 |
| MIMAT0027450 | hsa-miR-6775-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025739 | gga-miR-6642-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025310 | prv-miR-LLT7 | 2 | _...... | 7 | 85 |
| MIMAT0022017 | aca-miR-5404 | 7 | _...... | 2 | 85 |
| MIMAT0019956 | hsa-miR-4787-5p | 2 | _...... | 7 | 85 |
| MIMAT0019674 | osa-miR3979-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019623 | pma-miR-4590 | 2 | _...... | 7 | 85 |
| MIMAT0018658 | tca-miR-3817-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015991 | ppy-miR-542-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014471 | tgu-miR-425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013924 | ssc-miR-542-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013594 | bta-miR-542-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012600 | bmo-miR-2724 | 7 | _...... | 2 | 85 |
| MIMAT0012598 | hsv1-miR-H8-3p | 7 | _...... | 2 | 85 |
| MIMAT0011817 | bta-miR-2305 | 1 | _...... | 6 | 85 |
| MIMAT0011803 | bta-miR-2295 | 1 | ......_ | 6 | 85 |
| MIMAT0032036 | cfa-miR-486-3p | 1 | ......_ | 6 | 85 |
| MIMAT0006406 | mml-miR-542-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022946 | hsa-miR-1237-5p | 1 | _...... | 6 | 85 |
| MIMAT0003340 | hsa-miR-542-5p | 1 | ......_ | 6 | 85 |
