Result for your query miRNA sequence
>rcmv-miR-r111.1-3
ucgggggc

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1tcgggggc8
MIMAT0034826efu-miR-92248......._287
MIMAT0028127mmu-miR-7115-5p1......._787
MIMAT0012598hsv1-miR-H8-3p7_.......187
MIMAT0007867mmu-miR-18957......._187
MIMAT0022946hsa-miR-1237-5p1_.......787
MIMAT0028044mmu-miR-7069-5p1.t......887
MIMAT0027510hsa-miR-6805-5p1.a......887
MIMAT0024152ggo-miR-44881.a......887
MIMAT0014939mmu-miR-3104-5p1.a......887
MIMAT0037273ame-miR-98691......__675
MIMAT0037155ata-miR9772b-3p2__......775
MIMAT0037107ata-miR9772a-3p2__......775
MIMAT0036272chi-miR-542-5p1......__675
MIMAT0035713bhv5-miR-B112_......_775
MIMAT0035711bhv5-miR-B141_......_675
MIMAT0034985efu-miR-46672__......775
MIMAT0034798efu-miR-92088_......_375
MIMAT0034786efu-miR-9200b3_......_875
MIMAT0034525eca-miR-89888__......375
MIMAT0034481eca-miR-89527__......275
MIMAT0034035gra-miR7486d2__......775
MIMAT0032317ssa-miR-128-4-5p1__......675
MIMAT0031374stu-miR384-3p2__......775
MIMAT0030710prd-miR-7931-5p1__......675
MIMAT0030648prd-miR-7911b-5p6__......175
MIMAT0030648prd-miR-7911b-5p8_......_375
MIMAT0030646prd-miR-7911a-5p6__......175
MIMAT0030646prd-miR-7911a-5p8_......_375
MIMAT0028606mdo-miR-7306-5p3__......875
MIMAT0028149ssc-miR-7137-5p1_......_675
MIMAT0028072mmu-miR-7083-5p1......__675
MIMAT0028071mmu-miR-7082-3p6__......175
MIMAT0027838mmu-miR-6968-5p2__......775
MIMAT0027834mmu-miR-6966-5p2......__775
MIMAT0027694mmu-miR-6897-5p2__......775
MIMAT0027678hsa-miR-6889-5p1......__675
MIMAT0027670hsa-miR-6885-5p3__......875
MIMAT0027596hsa-miR-6848-5p2__......775
MIMAT0027592hsa-miR-6846-5p2__......775
MIMAT0027582hsa-miR-6840-5p7_......_275
MIMAT0027450hsa-miR-6775-5p1......__675
MIMAT0027355hsa-miR-6727-5p2......__775
MIMAT0025739gga-miR-6642-5p8......__375
MIMAT0025311prv-miR-LLT83__......875
MIMAT0025310prv-miR-LLT72_......_775
MIMAT0025071rno-miR-30727__......275
MIMAT0024864mmu-miR-62441__......675
MIMAT0024363ppy-miR-39438__......375
MIMAT0024210ggo-miR-39438__......375
MIMAT0024046ptr-miR-39438__......375
MIMAT0023983cgr-miR-542-5p2......__775
MIMAT0023893cgr-miR-3072-3p7__......275
MIMAT0022017aca-miR-54047_......_275
MIMAT0021732aca-miR-128-5p1__......675
MIMAT0019956hsa-miR-4787-5p2_......_775
MIMAT0019791hsa-miR-4697-5p2__......775
MIMAT0019674osa-miR3979-3p3......__875
MIMAT0019623pma-miR-45902_......_775
MIMAT0019022hsa-miR-44882__......775
MIMAT0018359hsa-miR-39438__......375
MIMAT0018658tca-miR-3817-5p1......__675
MIMAT0016865hsa-miR-43137__......275
MIMAT0015991ppy-miR-542-5p1......__675
MIMAT0015650hsv2-miR-H53__......875
MIMAT0014853mmu-miR-3072-3p7__......275
MIMAT0026977tgu-miR-128-2-5p1__......675
MIMAT0014471tgu-miR-425-3p3......__875
MIMAT0013924ssc-miR-542-5p1......__675
MIMAT0013237eca-miR-542-5p2......__775
MIMAT0013594bta-miR-542-5p1......__675
MIMAT0012600bmo-miR-27247_......_275
MIMAT0012046bta-miR-1777b1__......675
MIMAT0012035bta-miR-2454-5p3__......875
MIMAT0012032bta-miR-1777a2__......775
MIMAT0012005bta-miR-24332__......775
MIMAT0011857bta-miR-2328-5p6__......175
MIMAT0011856bta-miR-23272__......775
MIMAT0011817bta-miR-23051_......_675
MIMAT0011803bta-miR-22951......__675
MIMAT0032036cfa-miR-486-3p1......__675
MIMAT0006406mml-miR-542-5p1......__675
MIMAT0026814mml-miR-128b-5p1__......675
MIMAT0007472gga-miR-16062__......775
MIMAT0007078oan-miR-1421p-5p2__......775
MIMAT0005545mcmv-miR-M23-2-3p3__......875
MIMAT0026662mdo-miR-128a-5p1__......675
MIMAT0003340hsa-miR-542-5p1......__675
MIMAT0003178rno-miR-542-5p2......__775
MIMAT0003171mmu-miR-542-5p2......__775
MIMAT0026506gga-miR-128-2-5p1__......675
MIMAT0017119rno-miR-128-2-5p1__......675
MIMAT0026486hsa-miR-328-5p3__......875
MIMAT0031095hsa-miR-128-2-5p1__......675
MIMAT0017069mmu-miR-128-2-5p1__......675
MIMAT0017030mmu-miR-328-5p2__......775
MIMAT0017029rno-miR-328a-5p2__......775
MIMAT0017028rno-miR-326-5p1__......675
MIMAT0017027mmu-miR-326-5p1__......675