| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgtcctc | 8 | ||
| MIMAT0001578 | hcmv-miR-UL148D | 1 | ........ | 8 | 100 |
| MIMAT0027977 | mmu-miR-7036a-3p | 2 | _....... | 8 | 87 |
| MIMAT0024822 | hvu-miR6196 | 7 | ......._ | 1 | 87 |
| MIMAT0023292 | osa-miR5819 | 7 | ......._ | 1 | 87 |
| MIMAT0023260 | osa-miR5793 | 8 | _....... | 2 | 87 |
| MIMAT0021405 | rmi-miR-5332 | 1 | ......._ | 7 | 87 |
| MIMAT0009413 | mmu-miR-1947-5p | 7 | ......._ | 1 | 87 |
| MIMAT0007586 | gga-miR-1694 | 8 | _....... | 2 | 87 |
| MIMAT0015101 | cel-miR-59-5p | 1 | ......._ | 7 | 87 |
| MIMAT0032831 | cel-miR-8207-5p | 1 | .t...... | 8 | 87 |
| MIMAT0030627 | prd-miR-7907a-3p | 8 | .g...... | 1 | 87 |
| MIMAT0015437 | bmo-miR-3254 | 8 | ......g. | 1 | 87 |
| MIMAT0037264 | rno-miR-676 | 2 | _......_ | 7 | 75 |
| MIMAT0036988 | tae-miR9776 | 8 | ......__ | 3 | 75 |
| MIMAT0035919 | chi-miR-1224 | 8 | __...... | 3 | 75 |
| MIMAT0035566 | dvi-miR-311-5p | 6 | _......_ | 1 | 75 |
| MIMAT0034866 | efu-miR-9249 | 7 | __...... | 2 | 75 |
| MIMAT0034724 | eca-miR-9148 | 7 | __...... | 2 | 75 |
| MIMAT0034705 | eca-miR-676 | 2 | _......_ | 7 | 75 |
| MIMAT0034103 | gra-miR8714 | 8 | ......__ | 3 | 75 |
| MIMAT0033167 | ppc-miR-8315-5p | 1 | __...... | 6 | 75 |
| MIMAT0033047 | ppc-miR-8274-5p | 8 | __...... | 3 | 75 |
| MIMAT0031826 | cpa-miR398 | 7 | ......__ | 2 | 75 |
| MIMAT0031385 | aly-miR2111c-3p | 1 | __...... | 6 | 75 |
| MIMAT0030562 | prd-miR-7911c-5p | 1 | __...... | 6 | 75 |
| MIMAT0029650 | cbn-miR-7579 | 7 | __...... | 2 | 75 |
| MIMAT0029610 | crm-miR-7579 | 7 | __...... | 2 | 75 |
| MIMAT0029580 | cbr-miR-7579 | 7 | __...... | 2 | 75 |
| MIMAT0028476 | mdo-miR-7255-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028219 | hsa-miR-7154-3p | 8 | __...... | 3 | 75 |
| MIMAT0028152 | ssc-miR-7138-3p | 6 | __...... | 1 | 75 |
| MIMAT0027605 | hsa-miR-6852-3p | 2 | __...... | 7 | 75 |
| MIMAT0027331 | ppe-miR6295 | 6 | __...... | 1 | 75 |
| MIMAT0024835 | hvu-miR6207 | 7 | ......__ | 2 | 75 |
| MIMAT0024365 | ppy-miR-676 | 2 | _......_ | 7 | 75 |
| MIMAT0024325 | mml-miR-676-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023447 | hco-miR-5945-3p | 6 | __...... | 1 | 75 |
| MIMAT0023164 | gma-miR5767 | 8 | __...... | 3 | 75 |
| MIMAT0021414 | rmi-miR-5341 | 8 | ......__ | 3 | 75 |
| MIMAT0021182 | mtr-miR5224a | 8 | __...... | 3 | 75 |
| MIMAT0021027 | hsa-miR-5004-5p | 7 | __...... | 2 | 75 |
| MIMAT0019888 | hsa-miR-4751 | 7 | __...... | 2 | 75 |
| MIMAT0019781 | hsa-miR-4691-5p | 1 | __...... | 6 | 75 |
| MIMAT0018269 | gma-miR4368b | 7 | _......_ | 2 | 75 |
| MIMAT0018183 | hsa-miR-3909 | 2 | __...... | 7 | 75 |
| MIMAT0016776 | cin-miR-4168-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017849 | rno-miR-3569 | 7 | __...... | 2 | 75 |
| MIMAT0016369 | bra-miR2111a-3p | 1 | __...... | 6 | 75 |
| MIMAT0016365 | vvi-miR2111-3p | 1 | __...... | 6 | 75 |
| MIMAT0016158 | ppy-miR-1224-5p | 8 | __...... | 3 | 75 |
| MIMAT0016052 | ppy-miR-611 | 8 | __...... | 3 | 75 |
| MIMAT0017658 | aly-miR2111a-3p | 1 | __...... | 6 | 75 |
| MIMAT0014996 | hsa-miR-3131 | 8 | __...... | 3 | 75 |
| MIMAT0014699 | hsv2-miR-H12 | 8 | _......_ | 3 | 75 |
| MIMAT0014237 | aae-miR-278-5p | 8 | ......__ | 3 | 75 |
| MIMAT0013943 | ssc-miR-676-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020947 | osa-miR2867-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012827 | rno-miR-1224 | 8 | __...... | 3 | 75 |
| MIMAT0013556 | cte-miR-2695 | 6 | __...... | 1 | 75 |
| MIMAT0026928 | mtr-miR2111m-3p | 1 | __...... | 6 | 75 |
| MIMAT0011783 | bna-miR2111a-3p | 1 | __...... | 6 | 75 |
| MIMAT0011151 | ath-miR2111a-3p | 1 | __...... | 6 | 75 |
| MIMAT0009944 | bta-miR-1224 | 8 | __...... | 3 | 75 |
| MIMAT0015291 | bmo-miR-278-5p | 8 | ......__ | 3 | 75 |
| MIMAT0009436 | mmu-miR-1963 | 8 | ......__ | 3 | 75 |
| MIMAT0032099 | dvi-miR-92a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0006463 | mml-miR-611 | 8 | __...... | 3 | 75 |
| MIMAT0007657 | gga-miR-1750 | 7 | __...... | 2 | 75 |
| MIMAT0007555 | gga-miR-1671 | 8 | __...... | 3 | 75 |
| MIMAT0007393 | gma-miR1531-3p | 1 | ......__ | 6 | 75 |
| MIMAT0007307 | oan-miR-1421aj-5p | 8 | __...... | 3 | 75 |
| MIMAT0007303 | oan-miR-1421ah-5p | 8 | __...... | 3 | 75 |
| MIMAT0007257 | oan-miR-1421ac-5p | 8 | __...... | 3 | 75 |
| MIMAT0007072 | oan-miR-1421m-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005570 | mml-miR-1224-5p | 8 | __...... | 3 | 75 |
| MIMAT0005568 | ptr-miR-1224-5p | 8 | __...... | 3 | 75 |
| MIMAT0005377 | cre-miR1143-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005359 | tae-miR1124 | 8 | _......_ | 3 | 75 |
| MIMAT0004472 | mdv2-miR-M27-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004862 | mmu-miR-877-3p | 2 | __...... | 7 | 75 |
| MIMAT0003782 | mmu-miR-676-3p | 2 | _......_ | 7 | 75 |
| MIMAT0014802 | mmu-miR-1264-5p | 3 | __...... | 8 | 75 |
| MIMAT0005460 | mmu-miR-1224-5p | 8 | __...... | 3 | 75 |
| MIMAT0005458 | hsa-miR-1224-5p | 8 | __...... | 3 | 75 |
| MIMAT0003279 | hsa-miR-611 | 8 | __...... | 3 | 75 |
| MIMAT0020916 | osa-miR169f.2 | 7 | __...... | 2 | 75 |
| MIMAT0020802 | dme-miR-92a-5p | 6 | _......_ | 1 | 75 |
