| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctaggtt | 8 | ||
| MIMAT0036145 | chi-miR-331-5p | 1 | ......._ | 7 | 87 |
| MIMAT0033495 | str-miR-8400-3p | 2 | ......._ | 8 | 87 |
| MIMAT0029959 | osa-miR7694-5p | 7 | _....... | 1 | 87 |
| MIMAT0013929 | ssc-miR-331-5p | 1 | ......._ | 7 | 87 |
| MIMAT0011400 | sme-miR-2e-5p | 8 | _....... | 2 | 87 |
| MIMAT0007830 | osa-miR1862d | 2 | _....... | 8 | 87 |
| MIMAT0026716 | bta-miR-331-5p | 1 | ......._ | 7 | 87 |
| MIMAT0003432 | rlcv-miR-rL1-5-5p | 7 | _....... | 1 | 87 |
| MIMAT0036360 | gma-miR9740 | 1 | .g...... | 8 | 87 |
| MIMAT0016079 | ppy-miR-645 | 1 | ......c. | 8 | 87 |
| MIMAT0008298 | ptr-miR-645 | 1 | ......c. | 8 | 87 |
| MIMAT0003315 | hsa-miR-645 | 1 | ......c. | 8 | 87 |
| MIMAT0000388 | dme-miR-303-5p | 1 | .t...... | 8 | 87 |
| MIMAT0037072 | ssc-miR-9853-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035984 | chi-miR-154a-5p | 1 | __...... | 6 | 75 |
| MIMAT0035641 | dvi-miR-9550-3p | 1 | _......_ | 6 | 75 |
| MIMAT0034928 | efu-miR-337 | 8 | ......__ | 3 | 75 |
| MIMAT0034732 | eca-miR-9156 | 1 | ......__ | 6 | 75 |
| MIMAT0034723 | eca-miR-9147 | 1 | __...... | 6 | 75 |
| MIMAT0033737 | pxy-miR-8512 | 3 | __...... | 8 | 75 |
| MIMAT0032821 | cel-miR-4810b-5p | 2 | __...... | 7 | 75 |
| MIMAT0032538 | ssa-miR-221-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032393 | ssa-miR-155-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031536 | ppe-miR7125-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031005 | hsa-miR-8078 | 3 | ......__ | 8 | 75 |
| MIMAT0030994 | hsa-miR-8067 | 6 | ......__ | 1 | 75 |
| MIMAT0030706 | prd-miR-7929-5p | 3 | __...... | 8 | 75 |
| MIMAT0030203 | bdi-miR7734-3p | 8 | __...... | 3 | 75 |
| MIMAT0030016 | mtr-miR7701-3p | 2 | __...... | 7 | 75 |
| MIMAT0028891 | mdo-miR-7396-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028247 | mml-miR-3059-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026388 | sbi-miR5568b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026188 | mdm-miR1511 | 6 | _......_ | 1 | 75 |
| MIMAT0027504 | hsa-miR-6802-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025340 | pde-miR949a | 3 | ......__ | 8 | 75 |
| MIMAT0025012 | hme-miR-6306-5p | 2 | __...... | 7 | 75 |
| MIMAT0024853 | rno-miR-3473 | 1 | ......__ | 6 | 75 |
| MIMAT0023916 | cgr-miR-331-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023786 | cgr-miR-154-5p | 1 | __...... | 6 | 75 |
| MIMAT0022414 | ath-miR5645c | 6 | __...... | 1 | 75 |
| MIMAT0020580 | bdi-miR5069 | 1 | __...... | 6 | 75 |
| MIMAT0019823 | hsa-miR-4714-3p | 8 | __...... | 3 | 75 |
| MIMAT0019315 | oar-miR-154a-5p | 1 | __...... | 6 | 75 |
| MIMAT0018136 | pab-miR3704 | 3 | ......__ | 8 | 75 |
| MIMAT0016857 | hsa-miR-4305 | 6 | ......__ | 1 | 75 |
| MIMAT0016726 | cin-miR-4131-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016686 | cin-miR-4101-3p | 1 | __...... | 6 | 75 |
| MIMAT0016650 | cin-miR-4080-3p | 8 | __...... | 3 | 75 |
| MIMAT0016288 | sja-miR-3484-5p | 2 | __...... | 7 | 75 |
| MIMAT0016207 | ppy-miR-1285a | 1 | ......__ | 6 | 75 |
| MIMAT0015835 | ppy-miR-331-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017602 | aly-miR823-3p | 1 | __...... | 6 | 75 |
| MIMAT0015513 | bmo-miR-3326 | 1 | __...... | 6 | 75 |
| MIMAT0014948 | mmu-miR-3108-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013129 | eca-miR-154a | 1 | __...... | 6 | 75 |
| MIMAT0013468 | mtr-miR2661 | 1 | __...... | 6 | 75 |
| MIMAT0012413 | dps-miR-2571-3p | 1 | __...... | 6 | 75 |
| MIMAT0011953 | bta-miR-2398 | 2 | ......__ | 7 | 75 |
| MIMAT0011913 | bta-miR-2369 | 2 | __...... | 7 | 75 |
| MIMAT0009392 | mmu-miR-1929-5p | 2 | ......__ | 7 | 75 |
| MIMAT0009240 | bta-miR-154a | 1 | __...... | 6 | 75 |
| MIMAT0006272 | mml-miR-331-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006215 | mml-miR-154-5p | 1 | __...... | 6 | 75 |
| MIMAT0007656 | gga-miR-1816 | 2 | __...... | 7 | 75 |
| MIMAT0007512 | gga-miR-1815 | 1 | __...... | 6 | 75 |
| MIMAT0006039 | odi-miR-1486 | 1 | _......_ | 6 | 75 |
| MIMAT0007022 | oan-miR-1361-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006967 | oan-miR-1421c-5p | 1 | __...... | 6 | 75 |
| MIMAT0005251 | smo-miR1095b | 1 | __...... | 6 | 75 |
| MIMAT0005250 | smo-miR1095a | 1 | __...... | 6 | 75 |
| MIMAT0005161 | ppt-miR1047-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004205 | bmo-miR-282-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014812 | mmu-miR-3059-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003430 | rlcv-miR-rL1-4-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003410 | ebv-miR-BART3-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002300 | ppa-miR-154 | 1 | __...... | 6 | 75 |
| MIMAT0002299 | mne-miR-154 | 1 | __...... | 6 | 75 |
| MIMAT0002298 | ppy-miR-154 | 1 | __...... | 6 | 75 |
| MIMAT0002297 | ggo-miR-154 | 1 | __...... | 6 | 75 |
| MIMAT0002296 | ptr-miR-154 | 1 | __...... | 6 | 75 |
| MIMAT0000856 | rno-miR-154-5p | 1 | __...... | 6 | 75 |
| MIMAT0004700 | hsa-miR-331-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004643 | mmu-miR-331-5p | 1 | _......_ | 6 | 75 |
| MIMAT0000452 | hsa-miR-154-5p | 1 | __...... | 6 | 75 |
| MIMAT0000164 | mmu-miR-154-5p | 1 | __...... | 6 | 75 |
| MIMAT0016991 | mmu-miR-152-5p | 1 | __...... | 6 | 75 |
