| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctcatc | 7 | ||
| MIMAT0017920 | aly-miR3444b | 2 | ....... | 8 | 100 |
| MIMAT0015401 | bmo-miR-3221 | 1 | ....... | 7 | 100 |
| MIMAT0012417 | dps-miR-2573-3p | 1 | ....... | 7 | 100 |
| MIMAT0035619 | dvi-miR-9538-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033968 | esi-miR8623d | 1 | ......_ | 6 | 85 |
| MIMAT0033960 | esi-miR8623a | 1 | ......_ | 6 | 85 |
| MIMAT0033819 | pxy-miR-279b-5p | 6 | _...... | 1 | 85 |
| MIMAT0033769 | pxy-miR-8527 | 8 | ......_ | 3 | 85 |
| MIMAT0033728 | pxy-miR-8508 | 6 | ......_ | 1 | 85 |
| MIMAT0031708 | bbe-miR-4891-5p | 8 | _...... | 3 | 85 |
| MIMAT0031236 | stu-miR5304-3p | 7 | _...... | 2 | 85 |
| MIMAT0030925 | stu-miR1886i-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030900 | stu-miR1886g-5p | 8 | _...... | 3 | 85 |
| MIMAT0030847 | stu-miR7980a | 6 | ......_ | 1 | 85 |
| MIMAT0029050 | gga-miR-7448-5p | 1 | _...... | 6 | 85 |
| MIMAT0029045 | gga-miR-7445-3p | 7 | _...... | 2 | 85 |
| MIMAT0028251 | mml-miR-1245-3p | 6 | _...... | 1 | 85 |
| MIMAT0026100 | cme-miR854 | 6 | _...... | 1 | 85 |
| MIMAT0028030 | mmu-miR-7063-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027683 | hsa-miR-6891-3p | 3 | _...... | 8 | 85 |
| MIMAT0027641 | hsa-miR-6870-3p | 2 | _...... | 7 | 85 |
| MIMAT0025635 | gga-miR-6565-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025305 | prv-miR-LLT2 | 1 | _...... | 6 | 85 |
| MIMAT0024320 | mml-miR-1255a-5p | 8 | _...... | 3 | 85 |
| MIMAT0024236 | ggo-miR-3605 | 6 | _...... | 1 | 85 |
| MIMAT0024176 | ggo-miR-1255a | 8 | _...... | 3 | 85 |
| MIMAT0023697 | hsa-miR-6072 | 3 | _...... | 8 | 85 |
| MIMAT0022775 | sha-miR-340 | 3 | ......_ | 8 | 85 |
| MIMAT0021309 | mtr-miR2590g | 8 | ......_ | 3 | 85 |
| MIMAT0021240 | mtr-miR5244 | 3 | ......_ | 8 | 85 |
| MIMAT0020627 | mmu-miR-5119 | 3 | ......_ | 8 | 85 |
| MIMAT0020198 | dme-miR-4971-5p | 7 | _...... | 2 | 85 |
| MIMAT0020188 | dme-miR-4965-5p | 8 | _...... | 3 | 85 |
| MIMAT0020480 | bfl-miR-4891-5p | 8 | _...... | 3 | 85 |
| MIMAT0018173 | mghv-miR-M1-13-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018095 | hsa-miR-3672 | 6 | ......_ | 1 | 85 |
| MIMAT0018504 | ath-miR854e | 6 | _...... | 1 | 85 |
| MIMAT0016358 | gso-miR1507b | 1 | ......_ | 6 | 85 |
| MIMAT0016357 | gso-miR1507a | 1 | ......_ | 6 | 85 |
| MIMAT0016181 | ppy-miR-1255b | 7 | _...... | 2 | 85 |
| MIMAT0016180 | ppy-miR-1255a | 8 | _...... | 3 | 85 |
| MIMAT0016002 | ppy-miR-556-5p | 6 | _...... | 1 | 85 |
| MIMAT0017722 | aly-miR3444a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012721 | hvt-miR-H9-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013606 | bmo-miR-279d-5p | 6 | _...... | 1 | 85 |
| MIMAT0012300 | dps-miR-2515 | 7 | _...... | 2 | 85 |
| MIMAT0011178 | vun-miR1507b | 1 | ......_ | 6 | 85 |
| MIMAT0010089 | vun-miR1507a | 1 | ......_ | 6 | 85 |
| MIMAT0010080 | gma-miR1507b | 1 | ......_ | 6 | 85 |
| MIMAT0032042 | dvi-miR-2a-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0019096 | tca-miR-2b-5p | 2 | _...... | 7 | 85 |
| MIMAT0019094 | tca-miR-2a-5p | 1 | _...... | 6 | 85 |
| MIMAT0007980 | ptr-miR-1255b | 8 | _...... | 3 | 85 |
| MIMAT0026879 | mml-miR-452-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007365 | gma-miR1507a | 1 | ......_ | 6 | 85 |
| MIMAT0007036 | oan-miR-1371 | 8 | _...... | 3 | 85 |
| MIMAT0005945 | hsa-miR-1255b-5p | 8 | _...... | 3 | 85 |
| MIMAT0005906 | hsa-miR-1255a | 8 | _...... | 3 | 85 |
| MIMAT0004283 | ath-miR854d | 6 | _...... | 1 | 85 |
| MIMAT0004282 | ath-miR854c | 6 | _...... | 1 | 85 |
| MIMAT0004281 | ath-miR854b | 6 | _...... | 1 | 85 |
| MIMAT0004280 | ath-miR854a | 6 | _...... | 1 | 85 |
| MIMAT0012107 | sme-miR-71c-3p | 1 | ......_ | 6 | 85 |
| MIMAT0012106 | sme-miR-71a-1-3p | 1 | ......_ | 6 | 85 |
| MIMAT0003220 | hsa-miR-556-5p | 6 | _...... | 1 | 85 |
| MIMAT0001636 | hsa-miR-452-3p | 1 | _...... | 6 | 85 |
| MIMAT0020781 | dme-miR-2a-2-5p | 2 | _...... | 7 | 85 |
