Result for your query miRNA sequence
>hiv1-miR-tar-3p
ucucuggc

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1tctctggc8
MIMAT0034812efu-miR-92201........8100
MIMAT0006017hiv1-miR-TAR-3p1........8100
MIMAT0036421ggo-miR-518c-5p1......._787
MIMAT0036143chi-miR-330-5p1......._787
MIMAT0034521eca-miR-89841_.......787
MIMAT0027549hsa-miR-6824-3p1......._787
MIMAT0027429hsa-miR-6764-3p1......._787
MIMAT0025778gga-miR-6675-3p1......._787
MIMAT0020440tcc-miR399f8_.......287
MIMAT0019900hsa-miR-4756-3p7......._187
MIMAT0018701tca-miR-3834-3p1......._787
MIMAT0015833ppy-miR-330-5p1......._787
MIMAT0015404bmo-miR-3223-3p2......._887
MIMAT0022732hsa-miR-3191-5p2......._887
MIMAT0013012eca-miR-3301......._787
MIMAT0009893cfa-miR-3301......._787
MIMAT0006270mml-miR-330-5p1......._787
MIMAT0002847hsa-miR-518c-5p1......._787
MIMAT0004693hsa-miR-330-5p1......._787
MIMAT0004642mmu-miR-330-5p1......._787
MIMAT0004641rno-miR-330-5p1......._787
MIMAT0028377mml-miR-7205-3p1......a.887
MIMAT0027805mmu-miR-6952-3p1......a.887
MIMAT0019592pma-miR-45601......t.887
MIMAT0008403hsv1-miR-H5-3p8......a.187
MIMAT0007523gga-miR-16471......c.887
MIMAT0036763oha-miR-181b-3p3_......_875
MIMAT0036601tch-miR-3262_......_775
MIMAT0036412ggo-miR-525-5p8_......_375
MIMAT0036138chi-miR-326-3p2_......_775
MIMAT0035805tae-miR9678-3p1__......675
MIMAT0035726rno-miR-149-5p1__......675
MIMAT0035021efu-miR-1491__......675
MIMAT0034805efu-miR-92142......__775
MIMAT0034752eca-miR-91722_......_775
MIMAT0034689eca-miR-91382__......775
MIMAT0034556eca-miR-90158_......_375
MIMAT0034512eca-miR-89757_......_275
MIMAT0034455eca-miR-89271__......675
MIMAT0034342cfa-miR-88478_......_375
MIMAT0033810pxy-miR-2525-3p1__......675
MIMAT0031686bbe-miR-4864-3p7__......275
MIMAT0030635prd-miR-7909-3p7_......_275
MIMAT0030592prd-miR-240-5p7_......_275
MIMAT0029907mmu-miR-7688-3p1__......675
MIMAT0029811mmu-miR-7652-3p1__......675
MIMAT0029123hcmv-miR-UL696_......_175
MIMAT0028961oan-miR-7407-3p3......__875
MIMAT0028850mdo-miR-7386d-5p2_......_775
MIMAT0028737mdo-miR-7362-3p6_......_175
MIMAT0028654mdo-miR-7326-5p7......__275
MIMAT0028562mdo-miR-7290-5p1__......675
MIMAT0028145ssc-miR-7135-5p1......__675
MIMAT0026362bma-miR-58636__......175
MIMAT0027947mmu-miR-7021-3p1......__675
MIMAT0027535hsa-miR-6817-3p3......__875
MIMAT0027358hsa-miR-6728-3p1......__675
MIMAT0025744gga-miR-6647-5p3_......_875
MIMAT0025672gga-miR-6582-3p3_......_875
MIMAT0025464hsa-miR-6504-5p1__......675
MIMAT0025459hsa-miR-6501-3p6_......_175
MIMAT0025229ptc-miR64281__......675
MIMAT0025141mmu-miR-6392-5p1__......675
MIMAT0024809hvu-miR61851__......675
MIMAT0024570bta-miR-149-5p1__......675
MIMAT0024215ggo-miR-3262_......_775
MIMAT0024144ggo-miR-1491__......675
MIMAT0023913cgr-miR-3262_......_775
MIMAT0023780cgr-miR-149-5p1__......675
MIMAT0022374mmu-miR-5623-3p3__......875
MIMAT0022148osa-miR55148_......_375
MIMAT0022048aca-miR-54273__......875
MIMAT0021551asu-miR-5349-3p1__......675
MIMAT0021292mtr-miR5268b6_......_175
MIMAT0021291mtr-miR5268a6_......_175
MIMAT0020186dme-miR-4963-3p3......__875
MIMAT0020098bfl-miR-4864-3p8__......375
MIMAT0019967hsa-miR-47941__......675
MIMAT0019864hsa-miR-3064-5p1__......675
MIMAT0019718hsa-miR-4653-5p1......__675
MIMAT0019557pma-miR-497-3p6_......_175
MIMAT0018379ssc-miR-1491__......675
MIMAT0018228gma-miR43408......__375
MIMAT0018197hsa-miR-3922-3p1__......675
MIMAT0018196hsa-miR-39211......__675
MIMAT0018193hsa-miR-39197......__275
MIMAT0016878hsa-miR-42576_......_175
MIMAT0016868hsa-miR-43141_......_675
MIMAT0017805rno-miR-30851__......675
MIMAT0016292sja-miR-3486-5p1......__675
MIMAT0016036ppy-miR-5933......__875
MIMAT0015982ppy-miR-525-5p8_......_375
MIMAT0015969ppy-miR-520c-5p1_......_675
MIMAT0015966ppy-miR-520a-5p8_......_375
MIMAT0015955ppy-miR-518d-5p1_......_675
MIMAT0015830ppy-miR-3262_......_775
MIMAT0015773ppy-miR-1491__......675
MIMAT0015422bmo-miR-32397......__275
MIMAT0015073hsa-miR-3190-5p1__......675
MIMAT0014991hsa-miR-31281__......675
MIMAT0015377hsa-miR-3126-3p3__......875
MIMAT0014985hsa-miR-31236......__175
MIMAT0014879mmu-miR-3085-3p1__......675
MIMAT0014834mmu-miR-3064-5p1__......675
MIMAT0013831osa-miR28796__......175
MIMAT0012989eca-miR-3262_......_775
MIMAT0012973eca-miR-1491__......675
MIMAT0012322dps-miR-25332__......775
MIMAT0012052bta-miR-2464-3p8_......_375
MIMAT0012044bta-miR-24596__......175
MIMAT0012013bta-miR-2439-5p1__......675
MIMAT0011902bta-miR-23641......__675
MIMAT0011798bta-miR-22903_......_875
MIMAT0011456cel-miR-2218a-3p8__......375
MIMAT0011304dre-miR-21963......__875
MIMAT0009894cfa-miR-3262_......_775
MIMAT0009884cfa-miR-1491__......675
MIMAT0009814nve-miR-2045-5p8_......_375
MIMAT0009286bta-miR-3262_......_775
MIMAT0008264ptr-miR-5933......__875
MIMAT0008099ptr-miR-3262_......_775
MIMAT0008043ptr-miR-1491__......675
MIMAT0007873mmu-miR-18962......__775
MIMAT0006542mml-miR-942-5p3......__875
MIMAT0006453mml-miR-5933......__875
MIMAT0006402mml-miR-5258_......_375
MIMAT0026896mml-miR-520a-5p7_......_275
MIMAT0006210mml-miR-149-5p1__......675
MIMAT0007712gga-miR-1756b2......__775
MIMAT0007708gga-miR-17946__......175
MIMAT0007591gga-miR-16996_......_175
MIMAT0007581gga-miR-1690-5p7_......_275
MIMAT0007579gga-miR-1689-5p1......__675
MIMAT0006016hiv1-miR-TAR-5p3......__875
MIMAT0006927oan-miR-1420d-5p2__......775
MIMAT0026748mml-miR-514a-5p3_......_875
MIMAT0004845mmu-miR-881-5p6......__175
MIMAT0004303ath-miR8593......__875
MIMAT0004802hsa-miR-593-3p3......__875
MIMAT0022702hsa-miR-514a-5p3_......_875
MIMAT0002838hsa-miR-525-5p8_......_375
MIMAT0002833hsa-miR-520a-5p8_......_375
MIMAT0002140ssc-miR-3262_......_775
MIMAT0000756hsa-miR-3262_......_775
MIMAT0000560rno-miR-326-3p2_......_775
MIMAT0000559mmu-miR-326-3p2_......_775
MIMAT0000450hsa-miR-149-5p1__......675
MIMAT0000159mmu-miR-149-5p1__......675