| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctgaga | 7 | ||
| MIMAT0037060 | ssc-miR-9842-5p | 7 | ....... | 1 | 100 |
| MIMAT0035429 | nve-miR-9464 | 1 | ....... | 7 | 100 |
| MIMAT0035123 | efu-miR-143 | 2 | ....... | 8 | 100 |
| MIMAT0034652 | eca-miR-9105 | 1 | ....... | 7 | 100 |
| MIMAT0034470 | eca-miR-8941 | 1 | ....... | 7 | 100 |
| MIMAT0028086 | mmu-miR-7090-5p | 7 | ....... | 1 | 100 |
| MIMAT0027956 | mmu-miR-7026-5p | 2 | ....... | 8 | 100 |
| MIMAT0027422 | hsa-miR-6761-5p | 1 | ....... | 7 | 100 |
| MIMAT0009149 | bkv-miR-B1-5p | 2 | ....... | 8 | 100 |
| MIMAT0009147 | jcv-miR-J1-5p | 2 | ....... | 8 | 100 |
| MIMAT0006630 | cfa-miR-1837 | 7 | ....... | 1 | 100 |
| MIMAT0036714 | oha-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0036341 | gma-miR5780b | 1 | ......_ | 6 | 85 |
| MIMAT0036205 | chi-miR-3958-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035959 | chi-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0034701 | eca-miR-8908f | 8 | ......_ | 3 | 85 |
| MIMAT0034693 | eca-miR-9141 | 1 | ......_ | 6 | 85 |
| MIMAT0034622 | eca-miR-9077 | 1 | ......_ | 6 | 85 |
| MIMAT0034575 | eca-miR-9033 | 1 | ......_ | 6 | 85 |
| MIMAT0034418 | cfa-miR-8908f | 8 | ......_ | 3 | 85 |
| MIMAT0033683 | sma-miR-8481-5p | 2 | _...... | 7 | 85 |
| MIMAT0033584 | sma-miR-8440-5p | 3 | _...... | 8 | 85 |
| MIMAT0032336 | ssa-miR-1338-3p | 7 | _...... | 2 | 85 |
| MIMAT0031538 | ppe-miR8126-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029952 | bta-miR-7691 | 2 | _...... | 7 | 85 |
| MIMAT0029557 | ipu-miR-7558b | 3 | _...... | 8 | 85 |
| MIMAT0029554 | ipu-miR-7558a | 3 | _...... | 8 | 85 |
| MIMAT0029415 | ipu-miR-1388 | 7 | _...... | 2 | 85 |
| MIMAT0028979 | oan-miR-7415-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028349 | mml-miR-7194-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028341 | mml-miR-7191-3p | 8 | _...... | 3 | 85 |
| MIMAT0028266 | mml-miR-7166-5p | 7 | _...... | 2 | 85 |
| MIMAT0028235 | hsa-miR-7162-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028148 | ssc-miR-7136-3p | 6 | _...... | 1 | 85 |
| MIMAT0028145 | ssc-miR-7135-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028005 | mmu-miR-7050-3p | 6 | _...... | 1 | 85 |
| MIMAT0027975 | mmu-miR-7035-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027966 | mmu-miR-7031-5p | 2 | _...... | 7 | 85 |
| MIMAT0027791 | mmu-miR-6945-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027475 | hsa-miR-6787-3p | 6 | _...... | 1 | 85 |
| MIMAT0025781 | gga-miR-6677-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025775 | gga-miR-6673-3p | 3 | _...... | 8 | 85 |
| MIMAT0025730 | gga-miR-6634-5p | 6 | _...... | 1 | 85 |
| MIMAT0025399 | tgu-miR-1467-5p | 7 | _...... | 2 | 85 |
| MIMAT0025321 | bmo-miR-6497-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031125 | rno-miR-1199-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022772 | sha-miR-352 | 7 | _...... | 2 | 85 |
| MIMAT0022568 | ola-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0022356 | mmu-miR-5615-3p | 8 | _...... | 3 | 85 |
| MIMAT0022162 | osa-miR5527 | 6 | _...... | 1 | 85 |
| MIMAT0021761 | aca-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0021609 | gma-miR5371-3p | 6 | _...... | 1 | 85 |
| MIMAT0019973 | hsa-miR-4797-3p | 6 | _...... | 1 | 85 |
| MIMAT0019767 | hsa-miR-4682 | 1 | ......_ | 6 | 85 |
| MIMAT0019718 | hsa-miR-4653-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019712 | hsa-miR-4649-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019607 | pma-miR-4574 | 2 | _...... | 7 | 85 |
| MIMAT0018196 | hsa-miR-3921 | 3 | ......_ | 8 | 85 |
| MIMAT0019220 | hsa-miR-3664-3p | 6 | _...... | 1 | 85 |
| MIMAT0017980 | ssc-miR-4339 | 3 | ......_ | 8 | 85 |
| MIMAT0016923 | hsa-miR-4329 | 2 | _...... | 7 | 85 |
| MIMAT0016883 | hsa-miR-4251 | 2 | _...... | 7 | 85 |
| MIMAT0016876 | hsa-miR-4324 | 3 | _...... | 8 | 85 |
| MIMAT0016286 | sja-miR-3483-5p | 3 | _...... | 8 | 85 |
| MIMAT0017732 | aly-miR3448-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015449 | bmo-miR-3265 | 2 | _...... | 7 | 85 |
| MIMAT0017392 | hsa-miR-3200-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014916 | mmu-miR-3097-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014594 | tgu-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0014623 | tgu-miR-2954-5p | 2 | _...... | 7 | 85 |
| MIMAT0012875 | hvt-miR-H18-3p | 1 | _...... | 6 | 85 |
| MIMAT0013591 | bta-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0011922 | bta-miR-2376 | 3 | ......_ | 8 | 85 |
| MIMAT0011293 | dre-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0010205 | hsv2-miR-H2 | 1 | ......_ | 6 | 85 |
| MIMAT0032089 | dvi-miR-285-5p | 2 | _...... | 7 | 85 |
| MIMAT0007651 | gga-miR-1746 | 6 | ......_ | 1 | 85 |
| MIMAT0007345 | gga-miR-1467-5p | 6 | _...... | 1 | 85 |
| MIMAT0007169 | oan-miR-1388-3p | 7 | _...... | 2 | 85 |
| MIMAT0005860 | mmu-miR-1199-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017294 | rno-miR-883-5p | 3 | _...... | 8 | 85 |
| MIMAT0017292 | rno-miR-880-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005014 | pta-miR952b | 3 | _...... | 8 | 85 |
| MIMAT0004399 | cre-miR919.2 | 6 | _...... | 1 | 85 |
| MIMAT0004369 | ppt-miR899 | 3 | _...... | 8 | 85 |
| MIMAT0004850 | mmu-miR-883b-5p | 3 | _...... | 8 | 85 |
| MIMAT0004848 | mmu-miR-883a-5p | 3 | _...... | 8 | 85 |
| MIMAT0017266 | mmu-miR-880-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003510 | mmu-miR-717 | 6 | ......_ | 1 | 85 |
| MIMAT0020817 | dme-miR-285-5p | 2 | _...... | 7 | 85 |
