| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctgtgcc | 8 | ||
| MIMAT0027679 | hsa-miR-6889-3p | 1 | ........ | 8 | 100 |
| MIMAT0014692 | hsv1-miR-H14-3p | 1 | ........ | 8 | 100 |
| MIMAT0037193 | ata-miR528-3p | 2 | _....... | 8 | 87 |
| MIMAT0036461 | mmu-miR-9769-5p | 8 | _....... | 2 | 87 |
| MIMAT0036034 | chi-miR-197-5p | 1 | ......._ | 7 | 87 |
| MIMAT0034760 | eca-miR-6529 | 2 | _....... | 8 | 87 |
| MIMAT0034389 | cfa-miR-8885 | 1 | ......._ | 7 | 87 |
| MIMAT0034278 | cfa-miR-6529 | 2 | _....... | 8 | 87 |
| MIMAT0030840 | prd-miR-7969-5p | 1 | _....... | 7 | 87 |
| MIMAT0028974 | oan-miR-7413-5p | 8 | _....... | 2 | 87 |
| MIMAT0028874 | mdo-miR-7388c-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028315 | mml-miR-6529-3p | 2 | _....... | 8 | 87 |
| MIMAT0028225 | hsa-miR-7157-3p | 1 | ......._ | 7 | 87 |
| MIMAT0027991 | mmu-miR-7043-3p | 2 | _....... | 8 | 87 |
| MIMAT0027934 | mmu-miR-7015-5p | 1 | ......._ | 7 | 87 |
| MIMAT0027915 | mmu-miR-7005-3p | 1 | _....... | 7 | 87 |
| MIMAT0027831 | mmu-miR-6965-3p | 1 | ......._ | 7 | 87 |
| MIMAT0027376 | hsa-miR-6737-3p | 1 | ......._ | 7 | 87 |
| MIMAT0025636 | gga-miR-6565-3p | 1 | ......._ | 7 | 87 |
| MIMAT0022686 | hvsa-miR-HSUR2-5p | 1 | ......._ | 7 | 87 |
| MIMAT0021378 | isc-miR-5308 | 1 | ......._ | 7 | 87 |
| MIMAT0027045 | bdi-miR528-3p | 2 | _....... | 8 | 87 |
| MIMAT0020597 | ssc-miR-2320-5p | 8 | _....... | 2 | 87 |
| MIMAT0015363 | zma-miR528b-3p | 2 | _....... | 8 | 87 |
| MIMAT0015362 | zma-miR528a-3p | 2 | _....... | 8 | 87 |
| MIMAT0012037 | bta-miR-2455 | 1 | ......._ | 7 | 87 |
| MIMAT0011844 | bta-miR-2320-5p | 8 | _....... | 2 | 87 |
| MIMAT0032015 | cel-miR-785-5p | 8 | ......._ | 2 | 87 |
| MIMAT0036931 | oha-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0036241 | chi-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0035406 | nve-miR-9445 | 1 | ......t. | 8 | 87 |
| MIMAT0032643 | ssa-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0029513 | ipu-miR-455b | 1 | .a...... | 8 | 87 |
| MIMAT0029512 | ipu-miR-455a | 1 | .a...... | 8 | 87 |
| MIMAT0026301 | ccr-miR-455 | 1 | .a...... | 8 | 87 |
| MIMAT0023964 | cgr-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0022607 | ola-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0021964 | aca-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0015899 | ppy-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0014655 | tgu-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0022957 | ssc-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0012752 | mdo-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0006603 | cfa-miR-455 | 1 | .a...... | 8 | 87 |
| MIMAT0006339 | mml-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0007547 | gga-miR-1664-3p | 1 | ......a. | 8 | 87 |
| MIMAT0005316 | rno-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0003835 | bta-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0003641 | xtr-miR-455 | 1 | .a...... | 8 | 87 |
| MIMAT0003485 | mmu-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0003364 | gga-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0003150 | hsa-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0003029 | tni-miR-455 | 1 | .a...... | 8 | 87 |
| MIMAT0003028 | fru-miR-455 | 1 | .a...... | 8 | 87 |
| MIMAT0001879 | dre-miR-455-5p | 1 | .a...... | 8 | 87 |
| MIMAT0037219 | ata-miR164b-3p | 3 | __...... | 8 | 75 |
| MIMAT0037061 | ssc-miR-9843-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036827 | oha-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036464 | tch-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0035208 | dme-miR-9372-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034994 | efu-miR-19 | 1 | _......_ | 6 | 75 |
| MIMAT0034802 | efu-miR-9211 | 1 | __...... | 6 | 75 |
| MIMAT0034634 | eca-miR-9089 | 7 | ......__ | 2 | 75 |
| MIMAT0034365 | cfa-miR-8868 | 3 | _......_ | 8 | 75 |
| MIMAT0034297 | cfa-miR-8807 | 1 | ......__ | 6 | 75 |
| MIMAT0034113 | gra-miR164a | 3 | __...... | 8 | 75 |
| MIMAT0033974 | sly-miR164a-3p | 3 | __...... | 8 | 75 |
| MIMAT0033846 | atr-miR8565a | 8 | __...... | 3 | 75 |
| MIMAT0033775 | pxy-miR-8489b | 1 | __...... | 6 | 75 |
| MIMAT0033647 | sma-miR-8464-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032737 | ssa-miR-8157-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032509 | ssa-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031667 | bbe-miR-31-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031645 | bbe-miR-210-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031862 | bbe-let-7a-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031563 | ppe-miR8133-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031526 | ppe-miR8123-3p | 2 | __...... | 7 | 75 |
| MIMAT0031426 | mmu-miR-8120 | 1 | __...... | 6 | 75 |
| MIMAT0031338 | stu-miR408a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030649 | prd-miR-7911b-3p | 3 | __...... | 8 | 75 |
| MIMAT0030404 | ptc-miR7829 | 7 | ......__ | 2 | 75 |
| MIMAT0030136 | bdi-miR7709-3p | 1 | __...... | 6 | 75 |
| MIMAT0029779 | cbn-miR-784 | 7 | __...... | 2 | 75 |
| MIMAT0029464 | ipu-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0029095 | gga-miR-7470-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029076 | gga-miR-7461-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029062 | gga-miR-7454-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028944 | oan-miR-7401-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028738 | mdo-miR-7363-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028427 | mmu-miR-7229-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028307 | mml-miR-4677-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026268 | ccr-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0028125 | hsa-miR-7114-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027947 | mmu-miR-7021-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027894 | mmu-miR-6996-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025814 | gga-miR-6704-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025774 | gga-miR-6672-3p | 8 | __...... | 3 | 75 |
| MIMAT0025753 | gga-miR-3524b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025712 | gga-miR-6616-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025641 | gga-miR-3594-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025584 | mmu-miR-6539 | 6 | _......_ | 1 | 75 |
| MIMAT0025556 | bta-miR-6526 | 3 | _......_ | 8 | 75 |
| MIMAT0025251 | ptc-miR6448 | 8 | __...... | 3 | 75 |
| MIMAT0024834 | hvu-miR6206 | 6 | __...... | 1 | 75 |
| MIMAT0024825 | hvu-miR6199 | 7 | ......__ | 2 | 75 |
| MIMAT0024146 | ggo-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0023849 | cgr-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023688 | ame-miR-6047b | 7 | _......_ | 2 | 75 |
| MIMAT0023580 | tca-miR-927b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023571 | tca-miR-6015-5p | 6 | __...... | 1 | 75 |
| MIMAT0022661 | ola-miR-210-3p | 2 | _......_ | 7 | 75 |
| MIMAT0022279 | hsa-miR-5582-5p | 8 | __...... | 3 | 75 |
| MIMAT0022023 | aca-miR-5407-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021868 | aca-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021571 | asu-miR-5355-3p | 2 | __...... | 7 | 75 |
| MIMAT0027067 | bdi-miR164a-3p | 3 | __...... | 8 | 75 |
| MIMAT0022987 | mmu-miR-5129-3p | 3 | __...... | 8 | 75 |
| MIMAT0020611 | mmu-miR-5104 | 1 | _......_ | 6 | 75 |
| MIMAT0021040 | hsa-miR-5008-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020160 | dme-miR-4949-5p | 7 | __...... | 2 | 75 |
| MIMAT0020127 | cel-miR-4921 | 1 | __...... | 6 | 75 |
| MIMAT0020514 | dme-miR-4908-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019763 | hsa-miR-4679 | 1 | ......__ | 6 | 75 |
| MIMAT0019761 | hsa-miR-4677-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019364 | pma-miR-1a-5p | 2 | __...... | 7 | 75 |
| MIMAT0019326 | oar-miR-3957-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022737 | hsa-miR-550b-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0018824 | tca-miR-3866-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018774 | tca-miR-3857-5p | 1 | __...... | 6 | 75 |
| MIMAT0018624 | tca-miR-3804a-5p | 7 | __...... | 2 | 75 |
| MIMAT0018049 | vvi-miR3638-5p | 1 | __...... | 6 | 75 |
| MIMAT0016557 | cin-miR-4034-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017865 | rno-miR-1912-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016292 | sja-miR-3486-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016242 | ppy-miR-1914 | 3 | _......_ | 8 | 75 |
| MIMAT0015801 | ppy-miR-210 | 1 | __...... | 6 | 75 |
| MIMAT0017452 | aly-miR164b-3p | 3 | __...... | 8 | 75 |
| MIMAT0015523 | bmo-miR-3336 | 1 | ......__ | 6 | 75 |
| MIMAT0015481 | bmo-miR-3294 | 8 | ......__ | 3 | 75 |
| MIMAT0014958 | mmu-miR-1912-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014451 | tgu-miR-1451-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014383 | cqu-miR-305-3p | 7 | __...... | 2 | 75 |
| MIMAT0014250 | aae-miR-305-3p | 7 | __...... | 2 | 75 |
| MIMAT0014097 | bma-miR-2b | 8 | ......__ | 3 | 75 |
| MIMAT0015320 | zma-miR164h-3p | 3 | __...... | 8 | 75 |
| MIMAT0013814 | osa-miR2867-5p | 1 | __...... | 6 | 75 |
| MIMAT0012908 | eca-miR-147b | 2 | __...... | 7 | 75 |
| MIMAT0012750 | mdo-miR-210-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013572 | cte-miR-210b | 1 | _......_ | 6 | 75 |
| MIMAT0011902 | bta-miR-2364 | 3 | ......__ | 8 | 75 |
| MIMAT0011859 | bta-miR-2329-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011849 | bta-miR-1721 | 6 | ......__ | 1 | 75 |
| MIMAT0011838 | bta-miR-2317 | 2 | ......__ | 7 | 75 |
| MIMAT0011629 | crm-miR-2230-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011575 | crm-miR-784-5p | 7 | __...... | 2 | 75 |
| MIMAT0011426 | cel-miR-2207-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009846 | cfa-miR-210 | 2 | _......_ | 7 | 75 |
| MIMAT0009494 | bfl-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019141 | bfl-miR-31-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032066 | dvi-miR-305-3p | 7 | __...... | 2 | 75 |
| MIMAT0008070 | ptr-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0007889 | hsa-miR-1914-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007761 | ssc-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0006240 | mml-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007600 | gga-miR-1813 | 2 | ......__ | 7 | 75 |
| MIMAT0007587 | gga-miR-1695 | 8 | _......_ | 3 | 75 |
| MIMAT0007439 | gga-miR-1578 | 1 | __...... | 6 | 75 |
| MIMAT0007421 | gga-miR-1562-3p | 1 | __...... | 6 | 75 |
| MIMAT0031061 | mdo-miR-1542-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0026766 | mdo-miR-1542-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0007324 | gga-miR-1451-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005152 | ppt-miR1042-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004285 | cbr-miR-784 | 7 | __...... | 2 | 75 |
| MIMAT0004219 | cel-miR-784-5p | 7 | __...... | 2 | 75 |
| MIMAT0003824 | bta-miR-210 | 2 | _......_ | 7 | 75 |
| MIMAT0003624 | xtr-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0003096 | tni-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0003095 | fru-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0022926 | osa-miR528-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015139 | zma-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0015138 | zma-miR164b-3p | 2 | __...... | 7 | 75 |
| MIMAT0001281 | dre-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000881 | rno-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000658 | mmu-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020827 | dme-miR-305-3p | 7 | __...... | 2 | 75 |
| MIMAT0000267 | hsa-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031878 | ath-miR164b-3p | 3 | __...... | 8 | 75 |
