| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctgttgt | 8 | ||
| MIMAT0007520 | gga-miR-1644 | 1 | ........ | 8 | 100 |
| MIMAT0005803 | mdv1-miR-M6-5p | 1 | ........ | 8 | 100 |
| MIMAT0037025 | ssc-miR-9807-5p | 2 | _....... | 8 | 87 |
| MIMAT0036825 | oha-miR-21-3p | 8 | _....... | 2 | 87 |
| MIMAT0034953 | efu-miR-9293 | 8 | ......._ | 2 | 87 |
| MIMAT0028675 | mdo-miR-7333-3p | 1 | ......._ | 7 | 87 |
| MIMAT0025601 | gga-miR-6548-5p | 8 | _....... | 2 | 87 |
| MIMAT0024981 | hme-miR-3327 | 8 | _....... | 2 | 87 |
| MIMAT0019811 | hsa-miR-4709-5p | 7 | _....... | 1 | 87 |
| MIMAT0016457 | cin-miR-4001f-3p | 2 | _....... | 8 | 87 |
| MIMAT0016191 | ppy-miR-1267 | 1 | ......._ | 7 | 87 |
| MIMAT0015514 | bmo-miR-3327-5p | 8 | _....... | 2 | 87 |
| MIMAT0014683 | hma-miR-3014 | 8 | ......._ | 2 | 87 |
| MIMAT0014636 | tgu-miR-21-3p | 8 | _....... | 2 | 87 |
| MIMAT0026925 | mtr-miR2592s-5p | 7 | _....... | 1 | 87 |
| MIMAT0026924 | mtr-miR2592b-5p | 7 | _....... | 1 | 87 |
| MIMAT0007659 | gga-miR-1752 | 2 | ......._ | 8 | 87 |
| MIMAT0007198 | oan-miR-1396 | 1 | ......._ | 7 | 87 |
| MIMAT0036948 | oha-miR-7-3-3p | 8 | .t...... | 1 | 87 |
| MIMAT0036362 | gma-miR9742 | 1 | .g...... | 8 | 87 |
| MIMAT0029054 | gga-miR-7450-5p | 1 | ......c. | 8 | 87 |
| MIMAT0028971 | oan-miR-7412-3p | 1 | ......c. | 8 | 87 |
| MIMAT0027765 | mmu-miR-6932-3p | 1 | ......c. | 8 | 87 |
| MIMAT0020563 | bdi-miR5061 | 1 | ......c. | 8 | 87 |
| MIMAT0007377 | gma-miR1518 | 1 | .g...... | 8 | 87 |
| MIMAT0000607 | rno-miR-7a-1-3p | 8 | .t...... | 1 | 87 |
| MIMAT0036353 | gma-miR9733 | 7 | ......__ | 2 | 75 |
| MIMAT0036324 | ocu-miR-367-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036219 | chi-miR-421-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036062 | chi-miR-21-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035657 | bra-miR9408-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035623 | dvi-miR-9540-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035593 | dvi-miR-973-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035146 | efu-miR-21 | 6 | _......_ | 1 | 75 |
| MIMAT0035145 | efu-miR-9355 | 2 | _......_ | 7 | 75 |
| MIMAT0034809 | efu-miR-9217 | 2 | _......_ | 7 | 75 |
| MIMAT0034590 | eca-miR-9046 | 3 | _......_ | 8 | 75 |
| MIMAT0034417 | cfa-miR-8904a | 7 | ......__ | 2 | 75 |
| MIMAT0034407 | cfa-miR-8799g | 3 | _......_ | 8 | 75 |
| MIMAT0034372 | cfa-miR-8799f | 3 | _......_ | 8 | 75 |
| MIMAT0034371 | cfa-miR-8799e | 3 | _......_ | 8 | 75 |
| MIMAT0034341 | cfa-miR-8799d | 3 | _......_ | 8 | 75 |
| MIMAT0034318 | cfa-miR-8799c | 3 | _......_ | 8 | 75 |
| MIMAT0034316 | cfa-miR-8799b | 3 | _......_ | 8 | 75 |
| MIMAT0034289 | cfa-miR-8799a | 3 | _......_ | 8 | 75 |
| MIMAT0033840 | atr-miR8564 | 3 | _......_ | 8 | 75 |
| MIMAT0033815 | pxy-miR-8546 | 3 | _......_ | 8 | 75 |
| MIMAT0033287 | ppc-miR-84f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033215 | ppc-miR-8335-3p | 3 | __...... | 8 | 75 |
| MIMAT0032817 | cel-miR-8202-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032777 | ath-miR8178 | 7 | ......__ | 2 | 75 |
| MIMAT0032617 | ssa-miR-338a-4-5p | 7 | __...... | 2 | 75 |
| MIMAT0032537 | ssa-miR-21b-3p | 8 | __...... | 3 | 75 |
| MIMAT0032535 | ssa-miR-21a-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0032455 | ssa-miR-196a-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0031683 | bbe-miR-4863-5p | 8 | __...... | 3 | 75 |
| MIMAT0031649 | bbe-miR-217-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031631 | bbe-miR-2067-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030570 | prd-miR-7893-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030374 | ptc-miR7816 | 3 | __...... | 8 | 75 |
| MIMAT0030231 | bdi-miR7745-3p | 2 | __...... | 7 | 75 |
| MIMAT0030101 | bdi-miR5174b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030068 | bdi-miR5174e-5p.1 | 3 | ......__ | 8 | 75 |
| MIMAT0029660 | cbn-miR-7621a | 7 | _......_ | 2 | 75 |
| MIMAT0031140 | aja-miR-21 | 6 | _......_ | 1 | 75 |
| MIMAT0029107 | gga-miR-7476-3p | 8 | __...... | 3 | 75 |
| MIMAT0029051 | gga-miR-7448-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029028 | gga-miR-7437-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028892 | mdo-miR-7397-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028361 | mml-miR-7198-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026400 | sbi-miR5568c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027865 | mmu-miR-6981-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027841 | mmu-miR-6969-3p | 1 | __...... | 6 | 75 |
| MIMAT0027411 | hsa-miR-6755-3p | 1 | __...... | 6 | 75 |
| MIMAT0025425 | pol-miR-21-3p | 8 | __...... | 3 | 75 |
| MIMAT0025387 | ssc-miR-3613 | 1 | __...... | 6 | 75 |
| MIMAT0025346 | pde-miR952c | 6 | ......__ | 1 | 75 |
| MIMAT0025345 | pde-miR952b | 6 | ......__ | 1 | 75 |
| MIMAT0025344 | pde-miR952a | 6 | ......__ | 1 | 75 |
| MIMAT0024823 | hvu-miR6197 | 1 | ......__ | 6 | 75 |
| MIMAT0024574 | bta-miR-3613a | 1 | __...... | 6 | 75 |
| MIMAT0024168 | ggo-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0024003 | cgr-miR-744-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023117 | mtr-miR5740 | 8 | ......__ | 3 | 75 |
| MIMAT0022579 | ola-miR-338-5p | 7 | __...... | 2 | 75 |
| MIMAT0022449 | gma-miR5667-3p | 7 | ......__ | 2 | 75 |
| MIMAT0022348 | cin-miR-5610-3p | 2 | _......_ | 7 | 75 |
| MIMAT0022087 | aca-miR-5444b | 2 | ......__ | 7 | 75 |
| MIMAT0022084 | aca-miR-5457 | 7 | _......_ | 2 | 75 |
| MIMAT0022076 | aca-miR-5452-3p | 8 | __...... | 3 | 75 |
| MIMAT0021866 | aca-miR-21-3p | 8 | __...... | 3 | 75 |
| MIMAT0021169 | mtr-miR2592am | 6 | _......_ | 1 | 75 |
| MIMAT0021168 | mtr-miR2592al | 6 | _......_ | 1 | 75 |
| MIMAT0021166 | mtr-miR2592aj | 6 | _......_ | 1 | 75 |
| MIMAT0021165 | mtr-miR2592ai | 6 | _......_ | 1 | 75 |
| MIMAT0021164 | mtr-miR2592ah | 6 | _......_ | 1 | 75 |
| MIMAT0021162 | mtr-miR2592af | 6 | _......_ | 1 | 75 |
| MIMAT0021161 | mtr-miR2592ae | 6 | _......_ | 1 | 75 |
| MIMAT0021160 | mtr-miR2592ad | 6 | _......_ | 1 | 75 |
| MIMAT0021159 | mtr-miR2592ac | 6 | _......_ | 1 | 75 |
| MIMAT0021158 | mtr-miR2592ab | 6 | _......_ | 1 | 75 |
| MIMAT0021156 | mtr-miR2592z | 6 | _......_ | 1 | 75 |
| MIMAT0021155 | mtr-miR2592y | 6 | _......_ | 1 | 75 |
| MIMAT0021154 | mtr-miR2592x | 6 | _......_ | 1 | 75 |
| MIMAT0021153 | mtr-miR2592w | 6 | _......_ | 1 | 75 |
| MIMAT0021152 | mtr-miR2592v | 6 | _......_ | 1 | 75 |
| MIMAT0021151 | mtr-miR2592u | 6 | _......_ | 1 | 75 |
| MIMAT0021149 | mtr-miR2592t | 6 | _......_ | 1 | 75 |
| MIMAT0020722 | bdi-miR5175b | 3 | ......__ | 8 | 75 |
| MIMAT0021025 | hsa-miR-5003-5p | 8 | __...... | 3 | 75 |
| MIMAT0020095 | bfl-miR-4863-5p | 8 | __...... | 3 | 75 |
| MIMAT0022741 | hsa-miR-3529-3p | 7 | __...... | 2 | 75 |
| MIMAT0019717 | hsa-miR-4652-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018367 | far-miR1134 | 8 | __...... | 3 | 75 |
| MIMAT0018327 | gma-miR4408 | 8 | __...... | 3 | 75 |
| MIMAT0018322 | gma-miR1520p | 2 | __...... | 7 | 75 |
| MIMAT0018247 | gma-miR4355 | 3 | _......_ | 8 | 75 |
| MIMAT0018234 | gma-miR4364b | 8 | __...... | 3 | 75 |
| MIMAT0018634 | tca-miR-3806-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017990 | hsa-miR-3613-5p | 1 | __...... | 6 | 75 |
| MIMAT0022962 | ssc-miR-421-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016768 | cin-miR-4162-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016730 | cin-miR-4133-3p | 3 | __...... | 8 | 75 |
| MIMAT0016675 | cin-miR-4094-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016670 | cin-miR-4092-5p | 3 | __...... | 8 | 75 |
| MIMAT0016975 | cin-miR-4001b-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016451 | cin-miR-4001c-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016356 | gso-miR1510a | 1 | __...... | 6 | 75 |
| MIMAT0016355 | gso-miR1510b | 1 | __...... | 6 | 75 |
| MIMAT0016281 | sja-miR-3480-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015880 | ppy-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0015580 | bmo-miR-3384-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015395 | bmo-miR-3215 | 1 | ......__ | 6 | 75 |
| MIMAT0014051 | osa-miR2920 | 8 | __...... | 3 | 75 |
| MIMAT0020944 | mtr-miR2592q-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020943 | mtr-miR2592o-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020942 | mtr-miR2592e-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020941 | mtr-miR2592d-5p | 6 | _......_ | 1 | 75 |
| MIMAT0012291 | dps-miR-2507a | 1 | __...... | 6 | 75 |
| MIMAT0012209 | dme-miR-2497-3p | 6 | __...... | 1 | 75 |
| MIMAT0020912 | dme-miR-2491-3p | 8 | __...... | 3 | 75 |
| MIMAT0012198 | dme-miR-2491-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011948 | bta-miR-2395 | 1 | _......_ | 6 | 75 |
| MIMAT0011680 | ppc-miR-2256 | 1 | __...... | 6 | 75 |
| MIMAT0010082 | gma-miR1510b-3p | 1 | __...... | 6 | 75 |
| MIMAT0009859 | cfa-miR-367 | 2 | _......_ | 7 | 75 |
| MIMAT0009762 | nve-miR-2024b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009314 | bta-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0008140 | ptr-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0007991 | ptr-miR-1267 | 2 | _......_ | 7 | 75 |
| MIMAT0006755 | cfa-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0006319 | mml-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0007699 | gga-miR-1787 | 1 | __...... | 6 | 75 |
| MIMAT0007368 | gma-miR1510a-3p | 2 | __...... | 7 | 75 |
| MIMAT0005971 | osa-miR444c.1 | 1 | __...... | 6 | 75 |
| MIMAT0005969 | osa-miR444b.1 | 1 | __...... | 6 | 75 |
| MIMAT0026760 | oan-miR-1398-3p | 3 | __...... | 8 | 75 |
| MIMAT0007190 | oan-miR-383-3p | 8 | __...... | 3 | 75 |
| MIMAT0007161 | oan-miR-21-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005921 | hsa-miR-1267 | 2 | _......_ | 7 | 75 |
| MIMAT0005416 | cre-miR1162-3p | 1 | __...... | 6 | 75 |
| MIMAT0005389 | cre-miR1149.2 | 1 | __...... | 6 | 75 |
| MIMAT0005369 | tae-miR1134 | 8 | __...... | 3 | 75 |
| MIMAT0017299 | rno-miR-196c-3p | 6 | __...... | 1 | 75 |
| MIMAT0020885 | dme-miR-987-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020870 | dme-miR-973-3p | 1 | ......__ | 6 | 75 |
| MIMAT0005013 | pta-miR952a | 6 | ......__ | 1 | 75 |
| MIMAT0022937 | cgr-miR-21-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004946 | hsa-miR-744-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004869 | mmu-miR-421-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026643 | gga-miR-21-3p | 8 | __...... | 3 | 75 |
| MIMAT0004820 | mmu-miR-744-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003339 | hsa-miR-421 | 8 | _......_ | 3 | 75 |
| MIMAT0017214 | mmu-miR-367-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006784 | ptc-miR394b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0006783 | ptc-miR394a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0001331 | osa-miR415 | 6 | ......__ | 1 | 75 |
| MIMAT0001323 | ath-miR415 | 6 | ......__ | 1 | 75 |
| MIMAT0017175 | rno-miR-421-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004711 | rno-miR-21-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004686 | hsa-miR-367-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004628 | mmu-miR-21a-3p | 6 | _......_ | 1 | 75 |
