| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcttagtg | 8 | ||
| MIMAT0000999 | ebv-miR-BART1-5p | 1 | ........ | 8 | 100 |
| MIMAT0034176 | gra-miR8750 | 1 | ......._ | 7 | 87 |
| MIMAT0033900 | atr-miR8609 | 7 | ......._ | 1 | 87 |
| MIMAT0033580 | sma-miR-8438-5p | 7 | _....... | 1 | 87 |
| MIMAT0034239 | gra-miR8786b | 1 | .t...... | 8 | 87 |
| MIMAT0034238 | gra-miR8786a | 1 | .t...... | 8 | 87 |
| MIMAT0028635 | mdo-miR-7317-3p | 1 | .t...... | 8 | 87 |
| MIMAT0022464 | gma-miR4387e | 1 | .g...... | 8 | 87 |
| MIMAT0016819 | cin-miR-4200-5p | 8 | .t...... | 1 | 87 |
| MIMAT0003434 | rlcv-miR-rL1-6-5p | 1 | .t...... | 8 | 87 |
| MIMAT0034604 | eca-miR-9059 | 1 | ......__ | 6 | 75 |
| MIMAT0034356 | cfa-miR-8861 | 1 | __...... | 6 | 75 |
| MIMAT0034199 | gra-miR8765 | 1 | __...... | 6 | 75 |
| MIMAT0034130 | gra-miR8730 | 6 | ......__ | 1 | 75 |
| MIMAT0033886 | atr-miR8597 | 1 | __...... | 6 | 75 |
| MIMAT0033880 | atr-miR8593 | 1 | ......__ | 6 | 75 |
| MIMAT0030790 | prd-miR-7953-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030364 | hhi-miR-728 | 8 | _......_ | 3 | 75 |
| MIMAT0030168 | bdi-miR7717b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029835 | mmu-miR-7664-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029523 | ipu-miR-728 | 8 | _......_ | 3 | 75 |
| MIMAT0029106 | gga-miR-7476-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028512 | mdo-miR-7271-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028468 | mdo-miR-7251-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025570 | bta-miR-6534 | 7 | ......__ | 2 | 75 |
| MIMAT0022399 | ath-miR5630b | 7 | ......__ | 2 | 75 |
| MIMAT0022389 | ath-miR5630a | 7 | ......__ | 2 | 75 |
| MIMAT0022067 | aca-miR-5445 | 6 | ......__ | 1 | 75 |
| MIMAT0021940 | aca-miR-34a-3p | 8 | __...... | 3 | 75 |
| MIMAT0020584 | bdi-miR5070 | 7 | _......_ | 2 | 75 |
| MIMAT0027040 | bdi-miR1878-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019876 | hsa-miR-3591-5p | 2 | __...... | 7 | 75 |
| MIMAT0019753 | hsa-miR-4671-3p | 1 | __...... | 6 | 75 |
| MIMAT0018300 | gma-miR4388 | 3 | ......__ | 8 | 75 |
| MIMAT0018073 | hsa-miR-3653-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017983 | hsa-miR-3606-5p | 1 | __...... | 6 | 75 |
| MIMAT0017625 | aly-miR840-5p | 7 | __...... | 2 | 75 |
| MIMAT0015625 | bmo-miR-3418 | 2 | ......__ | 7 | 75 |
| MIMAT0015389 | bmo-miR-3210 | 8 | _......_ | 3 | 75 |
| MIMAT0014797 | api-miR-3054 | 1 | __...... | 6 | 75 |
| MIMAT0013309 | mtr-miR2605 | 2 | _......_ | 7 | 75 |
| MIMAT0012229 | dps-miR-957-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011786 | dme-miR-2280-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009406 | mmu-miR-1941-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007854 | ath-miR1887 | 7 | _......_ | 2 | 75 |
| MIMAT0007615 | gga-miR-1718 | 6 | _......_ | 1 | 75 |
| MIMAT0007529 | gga-miR-1651-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007407 | gga-miR-1552-5p | 1 | __...... | 6 | 75 |
| MIMAT0005402 | cre-miR1154-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005142 | ppt-miR1035 | 3 | ......__ | 8 | 75 |
| MIMAT0005120 | ppt-miR1028c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005118 | ppt-miR1028b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005116 | ppt-miR1028a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020851 | dme-miR-957-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003757 | dre-miR-728 | 8 | _......_ | 3 | 75 |
