| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcttcac | 7 | ||
| MIMAT0031378 | osa-miR6249b | 8 | ....... | 2 | 100 |
| MIMAT0028567 | mdo-miR-7291-3p | 1 | ....... | 7 | 100 |
| MIMAT0027409 | hsa-miR-6754-3p | 1 | ....... | 7 | 100 |
| MIMAT0024871 | osa-miR6249a | 8 | ....... | 2 | 100 |
| MIMAT0023525 | ath-miR5999 | 1 | ....... | 7 | 100 |
| MIMAT0017809 | rno-miR-3551-5p | 1 | ....... | 7 | 100 |
| MIMAT0004476 | mdv2-miR-M29-5p | 1 | ....... | 7 | 100 |
| MIMAT0036218 | chi-miR-412-3p | 2 | _...... | 7 | 85 |
| MIMAT0034902 | efu-miR-9270 | 7 | _...... | 2 | 85 |
| MIMAT0034810 | efu-miR-9218 | 8 | ......_ | 3 | 85 |
| MIMAT0034671 | eca-miR-9121 | 2 | _...... | 7 | 85 |
| MIMAT0034438 | eca-miR-8910 | 6 | ......_ | 1 | 85 |
| MIMAT0033376 | str-miR-1175-5p | 8 | _...... | 3 | 85 |
| MIMAT0033371 | str-miR-252b-3p | 3 | _...... | 8 | 85 |
| MIMAT0033284 | ppc-miR-8364t-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033270 | ppc-miR-8364s-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033262 | ppc-miR-8364r-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033260 | ppc-miR-8364e-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033236 | ppc-miR-8345-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033216 | ppc-miR-8364i-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033209 | ppc-miR-8332-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033188 | ppc-miR-8364m-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033176 | ppc-miR-8364a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033161 | ppc-miR-8364w-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033119 | ppc-miR-8364g-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033109 | ppc-miR-8364f-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033083 | ppc-miR-8287-5p | 2 | _...... | 7 | 85 |
| MIMAT0033081 | ppc-miR-8364b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033045 | ppc-miR-8364n-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033030 | ppc-miR-8364c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033026 | ppc-miR-8364j-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031768 | hbv-miR-B8-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030502 | prd-miR-1175-5p | 8 | _...... | 3 | 85 |
| MIMAT0028986 | oan-miR-7419-5p | 2 | _...... | 7 | 85 |
| MIMAT0028723 | mdo-miR-7355-3p | 1 | _...... | 6 | 85 |
| MIMAT0028327 | mml-miR-7186-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026068 | mdm-miR169f | 6 | ......_ | 1 | 85 |
| MIMAT0026067 | mdm-miR169e | 6 | ......_ | 1 | 85 |
| MIMAT0028129 | mmu-miR-7116-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028094 | mmu-miR-7094-1-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027930 | mmu-miR-7013-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027577 | hsa-miR-6837-3p | 2 | _...... | 7 | 85 |
| MIMAT0025808 | gga-miR-6699-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025731 | gga-miR-6635-5p | 6 | _...... | 1 | 85 |
| MIMAT0025487 | hsa-miR-6515-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027316 | ppe-miR6285 | 8 | _...... | 3 | 85 |
| MIMAT0024830 | hvu-miR6202 | 6 | ......_ | 1 | 85 |
| MIMAT0024599 | hsa-miR-6126 | 6 | _...... | 1 | 85 |
| MIMAT0021617 | gma-miR5376 | 6 | ......_ | 1 | 85 |
| MIMAT0021359 | mtr-miR5293 | 8 | ......_ | 3 | 85 |
| MIMAT0021268 | mtr-miR160f | 8 | _...... | 3 | 85 |
| MIMAT0021186 | mtr-miR5227 | 6 | ......_ | 1 | 85 |
| MIMAT0019575 | pma-miR-4545-5p | 1 | _...... | 6 | 85 |
| MIMAT0019330 | oar-miR-412-5p | 1 | _...... | 6 | 85 |
| MIMAT0018222 | tae-miR395a | 6 | _...... | 1 | 85 |
| MIMAT0018203 | hsa-miR-676-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018782 | tca-miR-3858-5p | 7 | _...... | 2 | 85 |
| MIMAT0017988 | hsa-miR-3611 | 8 | _...... | 3 | 85 |
| MIMAT0016256 | sja-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0015879 | ppy-miR-412 | 2 | _...... | 7 | 85 |
| MIMAT0017680 | aly-miR163-3p.1 | 6 | ......_ | 1 | 85 |
| MIMAT0017620 | aly-miR835-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015563 | bmo-miR-3374-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015435 | bmo-miR-3252 | 6 | ......_ | 1 | 85 |
| MIMAT0015385 | bmo-miR-3207 | 8 | _...... | 3 | 85 |
| MIMAT0014125 | osa-miR395y | 6 | _...... | 1 | 85 |
| MIMAT0014124 | osa-miR395x | 6 | _...... | 1 | 85 |
| MIMAT0014013 | zma-miR395p-3p | 6 | _...... | 1 | 85 |
| MIMAT0014012 | zma-miR395o-3p | 6 | _...... | 1 | 85 |
| MIMAT0014011 | zma-miR395n-3p | 6 | _...... | 1 | 85 |
| MIMAT0014010 | zma-miR395m-3p | 6 | _...... | 1 | 85 |
| MIMAT0014009 | zma-miR395l-3p | 6 | _...... | 1 | 85 |
| MIMAT0014008 | zma-miR395k-3p | 6 | _...... | 1 | 85 |
| MIMAT0014007 | zma-miR395j-3p | 6 | _...... | 1 | 85 |
| MIMAT0014006 | zma-miR395i-3p | 6 | _...... | 1 | 85 |
| MIMAT0014005 | zma-miR395h-3p | 6 | _...... | 1 | 85 |
| MIMAT0014004 | zma-miR395g-3p | 6 | _...... | 1 | 85 |
| MIMAT0014003 | zma-miR395f-3p | 6 | _...... | 1 | 85 |
| MIMAT0014002 | zma-miR395e-3p | 6 | _...... | 1 | 85 |
| MIMAT0014001 | zma-miR395d-3p | 6 | _...... | 1 | 85 |
| MIMAT0012729 | iltv-miR-I5-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013761 | bmo-miR-2842 | 6 | ......_ | 1 | 85 |
| MIMAT0011421 | sme-miR-2200-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011356 | sbi-miR395l | 6 | _...... | 1 | 85 |
| MIMAT0011355 | sbi-miR395k | 6 | _...... | 1 | 85 |
| MIMAT0011354 | sbi-miR395j | 6 | _...... | 1 | 85 |
| MIMAT0011353 | sbi-miR395i | 6 | _...... | 1 | 85 |
| MIMAT0011352 | sbi-miR395h | 6 | _...... | 1 | 85 |
| MIMAT0011351 | sbi-miR395g | 6 | _...... | 1 | 85 |
| MIMAT0011350 | sbi-miR395c | 6 | _...... | 1 | 85 |
| MIMAT0009313 | bta-miR-412 | 2 | _...... | 7 | 85 |
| MIMAT0008139 | ptr-miR-412 | 2 | _...... | 7 | 85 |
| MIMAT0006318 | mml-miR-412-3p | 2 | _...... | 7 | 85 |
| MIMAT0007404 | gga-miR-1550-3p | 1 | _...... | 6 | 85 |
| MIMAT0005536 | mcmv-miR-m01-3-5p | 8 | _...... | 3 | 85 |
| MIMAT0004012 | sme-miR-281-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003878 | osa-miR395r | 6 | _...... | 1 | 85 |
| MIMAT0003877 | osa-miR395w | 6 | _...... | 1 | 85 |
| MIMAT0003876 | osa-miR395v | 6 | _...... | 1 | 85 |
| MIMAT0003874 | osa-miR395q | 6 | _...... | 1 | 85 |
| MIMAT0003873 | osa-miR395p | 6 | _...... | 1 | 85 |
| MIMAT0003871 | osa-miR395n | 6 | _...... | 1 | 85 |
| MIMAT0003870 | osa-miR395m | 6 | _...... | 1 | 85 |
| MIMAT0003124 | rno-miR-412-3p | 1 | _...... | 6 | 85 |
| MIMAT0002170 | hsa-miR-412-3p | 2 | _...... | 7 | 85 |
| MIMAT0001701 | zma-miR395a-3p | 6 | _...... | 1 | 85 |
| MIMAT0001700 | zma-miR395c-3p | 6 | _...... | 1 | 85 |
| MIMAT0001698 | zma-miR395b-3p | 6 | _...... | 1 | 85 |
| MIMAT0001433 | sbi-miR395e | 6 | _...... | 1 | 85 |
| MIMAT0001432 | sbi-miR395d | 6 | _...... | 1 | 85 |
| MIMAT0001430 | sbi-miR395a | 6 | _...... | 1 | 85 |
| MIMAT0001429 | sbi-miR395b | 6 | _...... | 1 | 85 |
| MIMAT0026505 | gga-miR-138-1-3p | 3 | _...... | 8 | 85 |
| MIMAT0000975 | osa-miR395u | 6 | _...... | 1 | 85 |
| MIMAT0000973 | osa-miR395a | 6 | _...... | 1 | 85 |
| MIMAT0000972 | osa-miR395c | 6 | _...... | 1 | 85 |
| MIMAT0000969 | osa-miR395t | 6 | _...... | 1 | 85 |
| MIMAT0000968 | osa-miR395s | 6 | _...... | 1 | 85 |
| MIMAT0000967 | osa-miR395l | 6 | _...... | 1 | 85 |
| MIMAT0000966 | osa-miR395k | 6 | _...... | 1 | 85 |
| MIMAT0000965 | osa-miR395j | 6 | _...... | 1 | 85 |
| MIMAT0000964 | osa-miR395i | 6 | _...... | 1 | 85 |
| MIMAT0000963 | osa-miR395h | 6 | _...... | 1 | 85 |
| MIMAT0000962 | osa-miR395g | 6 | _...... | 1 | 85 |
| MIMAT0000961 | osa-miR395e | 6 | _...... | 1 | 85 |
| MIMAT0000960 | osa-miR395d | 6 | _...... | 1 | 85 |
| MIMAT0000959 | osa-miR395b | 6 | _...... | 1 | 85 |
