| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcttgtct | 8 | ||
| MIMAT0012726 | iltv-miR-I3 | 1 | ........ | 8 | 100 |
| MIMAT0035396 | nve-miR-9435 | 1 | ......._ | 7 | 87 |
| MIMAT0035346 | gsa-miR-9400-5p | 8 | _....... | 2 | 87 |
| MIMAT0034631 | eca-miR-9086 | 1 | _....... | 7 | 87 |
| MIMAT0030614 | prd-miR-7902-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027308 | ppe-miR6279 | 8 | _....... | 2 | 87 |
| MIMAT0023458 | hco-miR-5955 | 8 | ......._ | 2 | 87 |
| MIMAT0021391 | rmi-miR-5317b | 1 | ......._ | 7 | 87 |
| MIMAT0016705 | cin-miR-4115-5p | 1 | _....... | 7 | 87 |
| MIMAT0004380 | ppt-miR904b | 1 | ......._ | 7 | 87 |
| MIMAT0004379 | ppt-miR904a | 1 | ......._ | 7 | 87 |
| MIMAT0035334 | gsa-miR-76b-5p | 1 | ......t. | 8 | 87 |
| MIMAT0031683 | bbe-miR-4863-5p | 8 | .g...... | 1 | 87 |
| MIMAT0028435 | mmu-miR-7233-3p | 1 | .a...... | 8 | 87 |
| MIMAT0020095 | bfl-miR-4863-5p | 8 | .g...... | 1 | 87 |
| MIMAT0016023 | ppy-miR-581 | 1 | ......g. | 8 | 87 |
| MIMAT0014054 | osa-miR2923 | 8 | .t...... | 1 | 87 |
| MIMAT0012306 | dps-miR-2528 | 1 | .t...... | 8 | 87 |
| MIMAT0008254 | ptr-miR-581 | 1 | ......g. | 8 | 87 |
| MIMAT0006442 | mml-miR-581 | 1 | ......g. | 8 | 87 |
| MIMAT0005971 | osa-miR444c.1 | 1 | .g...... | 8 | 87 |
| MIMAT0005969 | osa-miR444b.1 | 1 | .g...... | 8 | 87 |
| MIMAT0005389 | cre-miR1149.2 | 1 | .g...... | 8 | 87 |
| MIMAT0003246 | hsa-miR-581 | 1 | ......g. | 8 | 87 |
| MIMAT0036276 | chi-miR-544-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035701 | bra-miR158-5p | 3 | __...... | 8 | 75 |
| MIMAT0035648 | dvi-miR-975-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035631 | dvi-miR-9545-3p | 1 | __...... | 6 | 75 |
| MIMAT0034848 | efu-miR-9234b | 1 | __...... | 6 | 75 |
| MIMAT0034843 | efu-miR-9234a | 1 | __...... | 6 | 75 |
| MIMAT0034626 | eca-miR-9081 | 8 | __...... | 3 | 75 |
| MIMAT0034611 | eca-miR-9066 | 7 | __...... | 2 | 75 |
| MIMAT0034598 | eca-miR-9054 | 2 | ......__ | 7 | 75 |
| MIMAT0034060 | gra-miR8687 | 8 | __...... | 3 | 75 |
| MIMAT0033843 | atr-miR8567 | 6 | ......__ | 1 | 75 |
| MIMAT0033752 | pxy-miR-8521a | 1 | _......_ | 6 | 75 |
| MIMAT0033751 | pxy-miR-8521b | 1 | _......_ | 6 | 75 |
| MIMAT0033669 | sma-miR-8474-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033133 | ppc-miR-8304a-3p | 3 | __...... | 8 | 75 |
| MIMAT0033074 | ppc-miR-8304b-3p | 3 | __...... | 8 | 75 |
| MIMAT0032902 | ppc-miR-8229a-5p | 3 | __...... | 8 | 75 |
| MIMAT0032867 | ppc-miR-8218a-3p | 8 | __...... | 3 | 75 |
| MIMAT0032755 | ssa-miR-8162-5p | 1 | __...... | 6 | 75 |
| MIMAT0031687 | bbe-miR-4865-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030279 | bdi-miR7765-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029997 | mtr-miR7698-3p | 7 | __...... | 2 | 75 |
| MIMAT0029794 | mmu-miR-7646-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029783 | sci-miR-7642-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029003 | oan-miR-7426-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028997 | oan-miR-7423-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028947 | oan-miR-7402-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028244 | mml-miR-7163-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026026 | mdm-miR535c | 7 | _......_ | 2 | 75 |
| MIMAT0026025 | mdm-miR535b | 7 | _......_ | 2 | 75 |
| MIMAT0028105 | ddi-miR-7102 | 1 | __...... | 6 | 75 |
| MIMAT0027829 | mmu-miR-6964-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027537 | hsa-miR-6818-3p | 1 | __...... | 6 | 75 |
| MIMAT0025612 | gga-miR-6552-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025219 | ptc-miR6425e | 1 | __...... | 6 | 75 |
| MIMAT0025214 | ptc-miR6425d-5p | 1 | __...... | 6 | 75 |
| MIMAT0025207 | ptc-miR6425c-5p | 1 | __...... | 6 | 75 |
| MIMAT0025198 | ptc-miR6425b-5p | 1 | __...... | 6 | 75 |
| MIMAT0025190 | ptc-miR6425a-5p | 1 | __...... | 6 | 75 |
| MIMAT0024803 | hvu-miR5049c | 6 | __...... | 1 | 75 |
| MIMAT0024547 | cca-miR6110-5p | 2 | ......__ | 7 | 75 |
| MIMAT0024019 | cgr-miR-6092 | 8 | _......_ | 3 | 75 |
| MIMAT0023037 | tur-miR-7-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022430 | ath-miR5657 | 8 | _......_ | 3 | 75 |
| MIMAT0022134 | osa-miR5501 | 1 | ......__ | 6 | 75 |
| MIMAT0021833 | aca-miR-196c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021389 | rmi-miR-5317a | 3 | ......__ | 8 | 75 |
| MIMAT0021320 | mtr-miR5281a | 2 | ......__ | 7 | 75 |
| MIMAT0021088 | osa-miR5144-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020530 | ath-miR5024-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020520 | ath-miR5016 | 2 | ......__ | 7 | 75 |
| MIMAT0020147 | dme-miR-4940-3p | 7 | ......__ | 2 | 75 |
| MIMAT0020099 | bfl-miR-4865-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019351 | mmu-miR-3967 | 3 | _......_ | 8 | 75 |
| MIMAT0019298 | oar-miR-544-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018299 | gma-miR4387a | 7 | ......__ | 2 | 75 |
| MIMAT0018565 | ame-miR-3786 | 1 | _......_ | 6 | 75 |
| MIMAT0018075 | hsa-miR-3655 | 2 | _......_ | 7 | 75 |
| MIMAT0016918 | hsa-miR-4288 | 1 | __...... | 6 | 75 |
| MIMAT0017914 | aly-miR4226 | 7 | ......__ | 2 | 75 |
| MIMAT0016634 | cin-miR-4073-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016380 | gga-miR-219b | 7 | ......__ | 2 | 75 |
| MIMAT0016020 | ppy-miR-578 | 3 | ......__ | 8 | 75 |
| MIMAT0017675 | aly-miR158b-5p | 2 | __...... | 7 | 75 |
| MIMAT0017421 | aly-miR158a-5p | 3 | __...... | 8 | 75 |
| MIMAT0014757 | api-miR-3021 | 1 | __...... | 6 | 75 |
| MIMAT0014464 | tgu-miR-219b | 7 | ......__ | 2 | 75 |
| MIMAT0016959 | rlcv-miR-rL1-33-5p | 3 | __...... | 8 | 75 |
| MIMAT0013792 | bmo-miR-2856-5p | 1 | __...... | 6 | 75 |
| MIMAT0013727 | bmo-miR-2817 | 7 | ......__ | 2 | 75 |
| MIMAT0011893 | bta-miR-2356 | 1 | ......__ | 6 | 75 |
| MIMAT0012142 | sme-miR-1992-5p | 1 | __...... | 6 | 75 |
| MIMAT0010032 | mtr-miR1510a-5p | 1 | __...... | 6 | 75 |
| MIMAT0009915 | cfa-miR-578 | 3 | ......__ | 8 | 75 |
| MIMAT0009803 | nve-miR-2040a-3p | 2 | __...... | 7 | 75 |
| MIMAT0009021 | dwi-miR-309 | 8 | __...... | 3 | 75 |
| MIMAT0019118 | tca-miR-184-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015276 | bmo-miR-184-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015273 | bmo-miR-2b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006470 | mml-miR-624 | 7 | ......__ | 2 | 75 |
| MIMAT0006439 | mml-miR-578 | 3 | ......__ | 8 | 75 |
| MIMAT0007103 | oan-miR-1422o-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007102 | oan-miR-1422n-3p | 7 | __...... | 2 | 75 |
| MIMAT0005750 | age-miR-513e | 8 | ......__ | 3 | 75 |
| MIMAT0005853 | mmu-miR-669e-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005410 | cre-miR1160.2 | 7 | _......_ | 2 | 75 |
| MIMAT0005175 | ppt-miR1057 | 2 | ......__ | 7 | 75 |
| MIMAT0017282 | mmu-miR-544-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003243 | hsa-miR-578 | 3 | ......__ | 8 | 75 |
| MIMAT0001579 | hcmv-miR-US5-1 | 7 | _......_ | 2 | 75 |
| MIMAT0017033 | rno-miR-331-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020335 | cel-miR-241-3p | 2 | __...... | 7 | 75 |
| MIMAT0031873 | ath-miR158a-5p | 3 | __...... | 8 | 75 |
