| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgacctc | 7 | ||
| MIMAT0037064 | ssc-miR-6782-3p | 1 | ....... | 7 | 100 |
| MIMAT0034983 | efu-miR-9310 | 1 | ....... | 7 | 100 |
| MIMAT0034462 | eca-miR-8933 | 7 | ....... | 1 | 100 |
| MIMAT0034346 | cfa-miR-8851 | 1 | ....... | 7 | 100 |
| MIMAT0030312 | bdi-miR7779-5p | 7 | ....... | 1 | 100 |
| MIMAT0027879 | mmu-miR-6988-3p | 1 | ....... | 7 | 100 |
| MIMAT0027543 | hsa-miR-6821-3p | 1 | ....... | 7 | 100 |
| MIMAT0012364 | dps-miR-2552-5p | 8 | ....... | 2 | 100 |
| MIMAT0012361 | dps-miR-2550-3p | 1 | ....... | 7 | 100 |
| MIMAT0006965 | oan-miR-1421b-5p | 8 | ....... | 2 | 100 |
| MIMAT0003929 | mdv1-miR-M8-3p | 2 | ....... | 8 | 100 |
| MIMAT0037233 | ata-miR167d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0037175 | ata-miR167b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035986 | chi-miR-154b-5p | 7 | _...... | 2 | 85 |
| MIMAT0035875 | bra-miR2111-3p | 1 | _...... | 6 | 85 |
| MIMAT0035458 | sly-miR167b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035423 | nve-miR-9462 | 1 | ......_ | 6 | 85 |
| MIMAT0035039 | efu-miR-154 | 7 | _...... | 2 | 85 |
| MIMAT0034925 | efu-miR-215 | 3 | ......_ | 8 | 85 |
| MIMAT0034645 | eca-miR-9098 | 1 | ......_ | 6 | 85 |
| MIMAT0033773 | pxy-miR-8530-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032758 | ssa-miR-8163-3p | 8 | ......_ | 3 | 85 |
| MIMAT0031724 | bbe-miR-92d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031366 | stu-miR169d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0031329 | stu-miR477b-3p | 6 | _...... | 1 | 85 |
| MIMAT0030867 | stu-miR7991c | 8 | _...... | 3 | 85 |
| MIMAT0030866 | stu-miR7991b | 8 | _...... | 3 | 85 |
| MIMAT0030865 | stu-miR7991a | 8 | _...... | 3 | 85 |
| MIMAT0030518 | prd-miR-7880a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030092 | bdi-miR167e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029052 | gga-miR-7449-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028895 | mdo-miR-7394b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028891 | mdo-miR-7396-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028885 | mdo-miR-7393-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028843 | mdo-miR-7386c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028810 | mdo-miR-7377-5p | 8 | _...... | 3 | 85 |
| MIMAT0028322 | mml-miR-548i-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027929 | mmu-miR-7012-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027730 | mmu-miR-6915-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027624 | hsa-miR-6861-3p | 3 | _...... | 8 | 85 |
| MIMAT0027481 | hsa-miR-6790-3p | 2 | _...... | 7 | 85 |
| MIMAT0027419 | hsa-miR-6759-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025547 | bta-miR-154b | 7 | _...... | 2 | 85 |
| MIMAT0024388 | ppy-miR-3661 | 1 | ......_ | 6 | 85 |
| MIMAT0023279 | osa-miR5807 | 8 | _...... | 3 | 85 |
| MIMAT0022810 | sha-miR-125b | 8 | ......_ | 3 | 85 |
| MIMAT0022624 | ola-miR-192-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022369 | mmu-miR-5621-5p | 8 | _...... | 3 | 85 |
| MIMAT0022128 | osa-miR5495 | 7 | _...... | 2 | 85 |
| MIMAT0022090 | aca-miR-5435b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021175 | mtr-miR5217 | 6 | ......_ | 1 | 85 |
| MIMAT0020546 | hvu-miR5050 | 8 | _...... | 3 | 85 |
| MIMAT0020079 | bfl-miR-92d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019359 | hsa-miR-3974 | 8 | ......_ | 3 | 85 |
| MIMAT0019317 | oar-miR-154b-5p | 7 | _...... | 2 | 85 |
| MIMAT0019291 | oar-miR-3956-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018082 | hsa-miR-3661 | 1 | ......_ | 6 | 85 |
| MIMAT0016679 | cin-miR-4097-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016344 | ahy-miR3518 | 1 | ......_ | 6 | 85 |
| MIMAT0017480 | aly-miR167d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017478 | aly-miR167c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013101 | eca-miR-1898 | 6 | ......_ | 1 | 85 |
| MIMAT0012881 | peu-miR2913 | 6 | _...... | 1 | 85 |
| MIMAT0011997 | bta-miR-2427 | 6 | ......_ | 1 | 85 |
| MIMAT0011852 | bta-miR-2323 | 1 | ......_ | 6 | 85 |
| MIMAT0009808 | nve-miR-2040b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0009390 | mmu-miR-1927 | 1 | _...... | 6 | 85 |
| MIMAT0007875 | mmu-miR-1898 | 6 | ......_ | 1 | 85 |
| MIMAT0006588 | cel-miR-1821-3p | 7 | _...... | 2 | 85 |
| MIMAT0007313 | oan-miR-1421am | 8 | _...... | 3 | 85 |
| MIMAT0007022 | oan-miR-1361-3p | 1 | ......_ | 6 | 85 |
| MIMAT0006971 | oan-miR-1421e-5p | 8 | _...... | 3 | 85 |
| MIMAT0005422 | cre-miR1166.1 | 3 | _...... | 8 | 85 |
| MIMAT0004478 | hiv1-miR-N367 | 3 | ......_ | 8 | 85 |
| MIMAT0026661 | mdo-miR-125b-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003174 | rno-miR-540-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003167 | mmu-miR-540-3p | 6 | ......_ | 1 | 85 |
| MIMAT0002102 | ptc-miR481d | 3 | _...... | 8 | 85 |
| MIMAT0002100 | ptc-miR481c | 3 | _...... | 8 | 85 |
| MIMAT0002099 | ptc-miR481b | 3 | _...... | 8 | 85 |
| MIMAT0002098 | ptc-miR481a | 3 | _...... | 8 | 85 |
| MIMAT0022874 | osa-miR167h-3p | 6 | ......_ | 1 | 85 |
