| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgacgaga | 8 | ||
| MIMAT0030178 | bdi-miR7725a-5p | 1 | ........ | 8 | 100 |
| MIMAT0033289 | ppc-miR-8361-3p | 1 | ......._ | 7 | 87 |
| MIMAT0033213 | ppc-miR-8334-3p | 2 | _....... | 8 | 87 |
| MIMAT0021517 | asu-miR-5342-5p | 8 | ......._ | 2 | 87 |
| MIMAT0015509 | bmo-miR-3322 | 7 | _....... | 1 | 87 |
| MIMAT0010004 | bfl-miR-2075 | 8 | _....... | 2 | 87 |
| MIMAT0002080 | ptc-miR478e | 1 | ......._ | 7 | 87 |
| MIMAT0022169 | osa-miR5534a | 1 | ......c. | 8 | 87 |
| MIMAT0016936 | bta-miR-3601 | 8 | .c...... | 1 | 87 |
| MIMAT0014758 | api-miR-3022 | 8 | .a...... | 1 | 87 |
| MIMAT0037276 | ame-miR-9872 | 2 | __...... | 7 | 75 |
| MIMAT0037274 | ame-miR-9870 | 1 | ......__ | 6 | 75 |
| MIMAT0036137 | chi-miR-326-5p | 7 | _......_ | 2 | 75 |
| MIMAT0035689 | bra-miR9565-5p | 6 | __...... | 1 | 75 |
| MIMAT0035508 | bdi-miR9499 | 8 | _......_ | 3 | 75 |
| MIMAT0033280 | ppc-miR-8359-5p | 1 | __...... | 6 | 75 |
| MIMAT0032992 | ppc-miR-8250c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032967 | ppc-miR-2238j-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032966 | ppc-miR-2238j-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031515 | ppe-miR535b | 1 | ......__ | 6 | 75 |
| MIMAT0031239 | stu-miR1919-3p | 1 | __...... | 6 | 75 |
| MIMAT0030687 | prd-miR-7922-3p | 7 | __...... | 2 | 75 |
| MIMAT0032242 | rgl-miR7801 | 2 | __...... | 7 | 75 |
| MIMAT0028476 | mdo-miR-7255-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026083 | cme-miR858 | 6 | __...... | 1 | 75 |
| MIMAT0026027 | mdm-miR535d | 1 | ......__ | 6 | 75 |
| MIMAT0025250 | ptc-miR6447 | 2 | ......__ | 7 | 75 |
| MIMAT0024822 | hvu-miR6196 | 3 | _......_ | 8 | 75 |
| MIMAT0023669 | ame-miR-6046 | 3 | _......_ | 8 | 75 |
| MIMAT0023292 | osa-miR5819 | 3 | _......_ | 8 | 75 |
| MIMAT0023042 | tur-miR-2-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020717 | bdi-miR5173-5p | 6 | __...... | 1 | 75 |
| MIMAT0021015 | gma-miR4997 | 8 | ......__ | 3 | 75 |
| MIMAT0020231 | egr-miR-2c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019617 | pma-miR-4584 | 3 | ......__ | 8 | 75 |
| MIMAT0019615 | pma-miR-4582 | 6 | __...... | 1 | 75 |
| MIMAT0018766 | tca-miR-3855-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018610 | ame-miR-3741 | 1 | __...... | 6 | 75 |
| MIMAT0016311 | sja-miR-3502 | 2 | ......__ | 7 | 75 |
| MIMAT0017729 | aly-miR3447-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013962 | bhv1-miR-B1 | 3 | __...... | 8 | 75 |
| MIMAT0012728 | iltv-miR-I5-5p | 8 | __...... | 3 | 75 |
| MIMAT0011460 | cel-miR-2219-3p | 2 | ......__ | 7 | 75 |
| MIMAT0009413 | mmu-miR-1947-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019103 | tca-miR-13a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007913 | sly-miR1919c-3p | 1 | __...... | 6 | 75 |
| MIMAT0007912 | sly-miR1919b | 1 | __...... | 6 | 75 |
| MIMAT0007911 | sly-miR1919a | 1 | __...... | 6 | 75 |
| MIMAT0017301 | rno-miR-375-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003505 | mmu-miR-714 | 2 | _......_ | 7 | 75 |
| MIMAT0017078 | mmu-miR-375-5p | 3 | _......_ | 8 | 75 |
