| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgacgtg | 7 | ||
| MIMAT0012028 | bta-miR-2450c | 7 | ....... | 1 | 100 |
| MIMAT0012546 | mdv2-miR-M30-3p | 2 | ....... | 8 | 100 |
| MIMAT0002078 | ptc-miR478c | 1 | ....... | 7 | 100 |
| MIMAT0002077 | ptc-miR478b | 1 | ....... | 7 | 100 |
| MIMAT0002076 | ptc-miR478a | 1 | ....... | 7 | 100 |
| MIMAT0034534 | eca-miR-8995 | 3 | ......_ | 8 | 85 |
| MIMAT0034142 | gra-miR7486i | 3 | ......_ | 8 | 85 |
| MIMAT0032864 | ppc-miR-8217-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030596 | prd-miR-7966a-5p | 6 | _...... | 1 | 85 |
| MIMAT0029785 | lco-miR-7642-3p | 3 | _...... | 8 | 85 |
| MIMAT0029784 | sci-miR-7642-3p | 3 | _...... | 8 | 85 |
| MIMAT0029549 | ipu-miR-7553 | 1 | ......_ | 6 | 85 |
| MIMAT0029549 | ipu-miR-7553 | 8 | ......_ | 3 | 85 |
| MIMAT0027627 | hsa-miR-6863 | 3 | _...... | 8 | 85 |
| MIMAT0024554 | cca-miR6114-3p | 7 | _...... | 2 | 85 |
| MIMAT0019902 | hsa-miR-4757-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032113 | ath-miR3932b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018268 | gma-miR4371c | 1 | _...... | 6 | 85 |
| MIMAT0018875 | tca-miR-3888-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016812 | cin-miR-4194-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016795 | cin-miR-4181-3p | 8 | ......_ | 3 | 85 |
| MIMAT0012872 | hvt-miR-H17-5p | 8 | _...... | 3 | 85 |
| MIMAT0011677 | ppc-miR-63e | 3 | ......_ | 8 | 85 |
| MIMAT0007690 | gga-miR-1779 | 2 | _...... | 7 | 85 |
| MIMAT0004416 | rrv-miR-rR1-7-3p | 8 | _...... | 3 | 85 |
| MIMAT0003341 | hcmv-miR-US4-5p | 3 | _...... | 8 | 85 |
