| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgactttg | 8 | ||
| MIMAT0008977 | dvi-miR-284-3p | 8 | ........ | 1 | 100 |
| MIMAT0008628 | dmo-miR-284 | 8 | ........ | 1 | 100 |
| MIMAT0008611 | dgr-miR-284 | 8 | ........ | 1 | 100 |
| MIMAT0035787 | tae-miR9671-5p | 1 | ......._ | 7 | 87 |
| MIMAT0033087 | ppc-miR-76-5p | 2 | ......._ | 8 | 87 |
| MIMAT0030908 | stu-miR8012 | 2 | ......._ | 8 | 87 |
| MIMAT0025471 | hsa-miR-6507-3p | 7 | _....... | 1 | 87 |
| MIMAT0025064 | rno-miR-6325 | 7 | ......._ | 1 | 87 |
| MIMAT0016486 | cin-miR-4007-5p | 2 | ......._ | 8 | 87 |
| MIMAT0004312 | ath-miR864-3p | 8 | ......._ | 2 | 87 |
| MIMAT0037009 | ssc-miR-9791-3p | 8 | .c...... | 1 | 87 |
| MIMAT0034326 | cfa-miR-8833 | 1 | ......c. | 8 | 87 |
| MIMAT0033624 | sma-miR-8456-5p | 1 | .t...... | 8 | 87 |
| MIMAT0029956 | osa-miR7692-3p | 1 | ......g. | 8 | 87 |
| MIMAT0029032 | gga-miR-7439-5p | 1 | ......g. | 8 | 87 |
| MIMAT0017986 | hsa-miR-3609 | 8 | .c...... | 1 | 87 |
| MIMAT0015640 | mmu-miR-3470a | 1 | .c...... | 8 | 87 |
| MIMAT0008993 | dwi-miR-284 | 8 | ......a. | 1 | 87 |
| MIMAT0005141 | ppt-miR1034 | 1 | .t...... | 8 | 87 |
| MIMAT0037027 | ssc-miR-9809-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036751 | oha-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0036750 | oha-miR-1677b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036741 | oha-miR-15a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036617 | tch-miR-93-5p | 6 | __...... | 1 | 75 |
| MIMAT0036542 | tch-miR-9771g | 8 | _......_ | 3 | 75 |
| MIMAT0036516 | tch-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0036513 | tch-miR-9771d | 8 | __...... | 3 | 75 |
| MIMAT0036434 | ggo-miR-520g | 7 | __...... | 2 | 75 |
| MIMAT0036425 | ggo-miR-519d | 6 | __...... | 1 | 75 |
| MIMAT0036305 | chi-miR-93-5p | 6 | __...... | 1 | 75 |
| MIMAT0036073 | chi-miR-224-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036056 | chi-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0035998 | chi-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0035926 | chi-miR-125b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035165 | efu-miR-93 | 7 | __...... | 2 | 75 |
| MIMAT0034936 | efu-miR-9285 | 2 | ......__ | 7 | 75 |
| MIMAT0034488 | eca-miR-8956 | 2 | ......__ | 7 | 75 |
| MIMAT0034380 | cfa-miR-8880 | 8 | ......__ | 3 | 75 |
| MIMAT0034300 | cfa-miR-8810 | 2 | __...... | 7 | 75 |
| MIMAT0033971 | esi-miR8624b | 8 | __...... | 3 | 75 |
| MIMAT0033594 | sma-miR-8443-5p | 1 | __...... | 6 | 75 |
| MIMAT0033143 | ppc-miR-8229b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032506 | ssa-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0032414 | ssa-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0030976 | stu-miR8050-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031183 | stu-miR7983-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030541 | prd-miR-360-3p | 3 | __...... | 8 | 75 |
| MIMAT0030037 | oar-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0029780 | cbn-miR-85 | 8 | __...... | 3 | 75 |
| MIMAT0028869 | mdo-miR-7388a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028764 | mdo-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0028706 | mdo-miR-7347-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028544 | mdo-miR-7262b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028493 | mdo-miR-7263-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028439 | mmu-miR-7235-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028249 | mml-miR-6505-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026236 | ccr-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0028065 | mmu-miR-7079-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027863 | mmu-miR-6980-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027541 | hsa-miR-6820-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025467 | hsa-miR-6505-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025359 | ssc-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0024227 | ggo-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0024013 | cgr-miR-93-5p | 6 | __...... | 1 | 75 |
| MIMAT0023795 | cgr-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0023523 | ath-miR4245 | 7 | __...... | 2 | 75 |
| MIMAT0022819 | sha-miR-93 | 6 | __...... | 1 | 75 |
| MIMAT0022654 | ola-miR-17 | 6 | __...... | 1 | 75 |
| MIMAT0023091 | tur-miR-3931-3p | 2 | __...... | 7 | 75 |
| MIMAT0027104 | mmu-miR-5709-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022503 | mmu-miR-344i | 6 | ......__ | 1 | 75 |
| MIMAT0021863 | aca-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0021803 | aca-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0021798 | aca-miR-1677b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021796 | aca-miR-1677a | 1 | ......__ | 6 | 75 |
| MIMAT0021793 | aca-miR-15a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0021380 | isc-miR-3931 | 2 | __...... | 7 | 75 |
| MIMAT0021253 | mtr-miR5255 | 1 | ......__ | 6 | 75 |
| MIMAT0020709 | bdi-miR5167a-5p | 3 | __...... | 8 | 75 |
| MIMAT0020458 | bfl-miR-4875d-3p | 8 | __...... | 3 | 75 |
| MIMAT0019397 | pma-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0019395 | pma-miR-20a-5p | 6 | __...... | 1 | 75 |
| MIMAT0019383 | pma-miR-17a-5p | 6 | __...... | 1 | 75 |
| MIMAT0019358 | hsa-miR-3973 | 7 | __...... | 2 | 75 |
| MIMAT0018347 | ath-miR3932b-3p | 2 | __...... | 7 | 75 |
| MIMAT0018346 | ath-miR3932a | 2 | __...... | 7 | 75 |
| MIMAT0018051 | vvi-miR3639-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017934 | aly-miR4245 | 7 | __...... | 2 | 75 |
| MIMAT0016551 | cin-miR-4031-5p | 8 | __...... | 3 | 75 |
| MIMAT0016490 | cin-miR-1502b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017874 | rno-miR-3583-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015976 | ppy-miR-520h | 7 | __...... | 2 | 75 |
| MIMAT0015975 | ppy-miR-520g | 7 | __...... | 2 | 75 |
| MIMAT0015964 | ppy-miR-519d | 6 | __...... | 1 | 75 |
| MIMAT0015732 | ppy-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0017793 | esi-miR3458-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017678 | aly-miR163-5p.2 | 1 | _......_ | 6 | 75 |
| MIMAT0017611 | aly-miR829-5p | 1 | __...... | 6 | 75 |
| MIMAT0015635 | bmo-miR-3427 | 8 | _......_ | 3 | 75 |
| MIMAT0015587 | bmo-miR-3388-5p | 8 | ......__ | 3 | 75 |
| MIMAT0015527 | bmo-miR-3339 | 3 | _......_ | 8 | 75 |
| MIMAT0022731 | hsa-miR-3184-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015038 | hsa-miR-3164 | 3 | ......__ | 8 | 75 |
| MIMAT0014591 | tgu-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0027013 | tgu-miR-365-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017390 | tgu-miR-17a-5p | 6 | __...... | 1 | 75 |
| MIMAT0014628 | tgu-miR-125-1-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014472 | tgu-miR-1803-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014457 | tgu-miR-1784-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026959 | tgu-miR-1677-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013837 | bta-miR-193a | 3 | _......_ | 8 | 75 |
| MIMAT0013206 | eca-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0013202 | eca-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0013194 | eca-miR-106a | 6 | __...... | 1 | 75 |
| MIMAT0013084 | eca-miR-17 | 6 | __...... | 1 | 75 |
| MIMAT0013060 | eca-miR-93 | 6 | __...... | 1 | 75 |
| MIMAT0026932 | mdo-miR-301-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013637 | bmo-miR-2763-5p | 8 | __...... | 3 | 75 |
| MIMAT0012524 | dsi-miR-2582b-3p | 3 | __...... | 8 | 75 |
| MIMAT0012386 | dps-miR-2562-5p | 8 | ......__ | 3 | 75 |
| MIMAT0012358 | dps-miR-2549-5p | 8 | ......__ | 3 | 75 |
| MIMAT0011590 | crm-miR-50-3p | 8 | __...... | 3 | 75 |
| MIMAT0011531 | crm-miR-85 | 8 | __...... | 3 | 75 |
| MIMAT0011436 | cel-miR-2210-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011389 | sbi-miR821e | 6 | ......__ | 1 | 75 |
| MIMAT0011388 | sbi-miR821d | 6 | ......__ | 1 | 75 |
| MIMAT0011387 | sbi-miR821c | 6 | ......__ | 1 | 75 |
| MIMAT0011385 | sbi-miR821a | 6 | ......__ | 1 | 75 |
| MIMAT0011267 | sme-miR-2169-5p | 2 | __...... | 7 | 75 |
| MIMAT0009830 | cfa-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0009711 | cte-miR-2000 | 6 | _......_ | 1 | 75 |
| MIMAT0009271 | bta-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0009087 | dya-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0032096 | dvi-miR-304-3p | 2 | __...... | 7 | 75 |
| MIMAT0008902 | dsi-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0008798 | dse-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0008708 | dpe-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0008513 | der-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0008415 | dan-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0008204 | ptr-miR-520h | 7 | __...... | 2 | 75 |
| MIMAT0008203 | ptr-miR-520g | 7 | __...... | 2 | 75 |
| MIMAT0008195 | ptr-miR-519d | 6 | __...... | 1 | 75 |
| MIMAT0008069 | ptr-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0007755 | ssc-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0006744 | cfa-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0006696 | cfa-miR-93 | 6 | __...... | 1 | 75 |
| MIMAT0006395 | mml-miR-520g | 7 | __...... | 2 | 75 |
| MIMAT0006387 | mml-miR-519d | 6 | __...... | 1 | 75 |
| MIMAT0026850 | mml-miR-301a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0006164 | mml-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0007720 | gga-miR-1803 | 3 | ......__ | 8 | 75 |
| MIMAT0007563 | gga-miR-1677-3p | 1 | ......__ | 6 | 75 |
| MIMAT0007278 | oan-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0006887 | oan-miR-1422f-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006881 | oan-miR-1422e-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006853 | oan-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0005269 | smo-miR1112-5p | 1 | __...... | 6 | 75 |
| MIMAT0005177 | ppt-miR1059 | 8 | _......_ | 3 | 75 |
| MIMAT0032019 | ath-miR829-5p | 1 | __...... | 6 | 75 |
| MIMAT0004165 | mdo-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0004084 | osa-miR821c | 6 | ......__ | 1 | 75 |
| MIMAT0004083 | osa-miR821b | 6 | ......__ | 1 | 75 |
| MIMAT0004082 | osa-miR821a | 6 | ......__ | 1 | 75 |
| MIMAT0003837 | bta-miR-93 | 6 | __...... | 1 | 75 |
| MIMAT0003815 | bta-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0003796 | bta-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0003707 | xtr-miR-20b | 6 | __...... | 1 | 75 |
| MIMAT0003564 | xtr-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0003225 | hsa-miR-561-3p | 6 | __...... | 1 | 75 |
| MIMAT0003211 | rno-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0003187 | mmu-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0003119 | rno-miR-224-5p | 7 | ......__ | 2 | 75 |
| MIMAT0002917 | tni-miR-17 | 6 | __...... | 1 | 75 |
| MIMAT0002916 | fru-miR-17 | 6 | __...... | 1 | 75 |
| MIMAT0002867 | hsa-miR-520h | 7 | __...... | 2 | 75 |
| MIMAT0002858 | hsa-miR-520g-3p | 7 | __...... | 2 | 75 |
| MIMAT0002853 | hsa-miR-519d-3p | 6 | __...... | 1 | 75 |
| MIMAT0002721 | mne-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002714 | lla-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002707 | sla-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002700 | mml-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002693 | ptr-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002686 | ppy-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002679 | ppa-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002672 | age-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002665 | lca-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002658 | ggo-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0002599 | ppa-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0002598 | mne-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0002597 | ppy-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0002596 | ggo-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0002595 | ptr-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0002594 | mml-miR-224-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031073 | mml-miR-125b-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0002132 | ssc-miR-224 | 7 | ......__ | 2 | 75 |
| MIMAT0001778 | dre-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0001777 | dre-miR-17a-5p | 6 | __...... | 1 | 75 |
| MIMAT0001529 | aga-miR-9b | 1 | __...... | 6 | 75 |
| MIMAT0001413 | hsa-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0001411 | gga-miR-20b-5p | 6 | __...... | 1 | 75 |
| MIMAT0001348 | xla-miR-20 | 6 | __...... | 1 | 75 |
| MIMAT0001248 | dps-miR-284 | 8 | ......__ | 3 | 75 |
| MIMAT0001114 | gga-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0026493 | gga-miR-125b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0026467 | rno-miR-125b-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000817 | rno-miR-93-5p | 6 | __...... | 1 | 75 |
| MIMAT0000786 | rno-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0000671 | mmu-miR-224-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000649 | mmu-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0000540 | mmu-miR-93-5p | 6 | __...... | 1 | 75 |
| MIMAT0000490 | cbr-miR-85 | 8 | __...... | 3 | 75 |
| MIMAT0020826 | dme-miR-304-3p | 2 | __...... | 7 | 75 |
| MIMAT0000385 | mmu-miR-106a-5p | 6 | __...... | 1 | 75 |
| MIMAT0000281 | hsa-miR-224-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004529 | mmu-miR-125b-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000093 | hsa-miR-93-5p | 6 | __...... | 1 | 75 |
| MIMAT0000070 | hsa-miR-17-5p | 6 | __...... | 1 | 75 |
| MIMAT0000058 | cel-miR-85-3p | 8 | __...... | 3 | 75 |
