| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgaggctt | 8 | ||
| MIMAT0028682 | mdo-miR-7337-5p | 8 | ........ | 1 | 100 |
| MIMAT0005231 | smo-miR1081 | 1 | ........ | 8 | 100 |
| MIMAT0034714 | eca-miR-2114 | 7 | ......._ | 1 | 87 |
| MIMAT0034680 | eca-miR-9129 | 1 | ......._ | 7 | 87 |
| MIMAT0033171 | ppc-miR-8315-2-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028116 | hsa-miR-7109-3p | 8 | _....... | 2 | 87 |
| MIMAT0028042 | mmu-miR-7068-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027539 | hsa-miR-6819-3p | 7 | _....... | 1 | 87 |
| MIMAT0024401 | ppy-miR-3188 | 2 | _....... | 8 | 87 |
| MIMAT0023397 | hco-miR-5911c | 1 | ......._ | 7 | 87 |
| MIMAT0023163 | gma-miR5766 | 2 | ......._ | 8 | 87 |
| MIMAT0019952 | hsa-miR-2467-5p | 1 | ......._ | 7 | 87 |
| MIMAT0019360 | hsa-miR-3975 | 1 | ......._ | 7 | 87 |
| MIMAT0018915 | smr-miR-282 | 7 | _....... | 1 | 87 |
| MIMAT0018515 | ame-miR-3747a | 2 | _....... | 8 | 87 |
| MIMAT0015070 | hsa-miR-3188 | 2 | _....... | 8 | 87 |
| MIMAT0013632 | bmo-miR-2760-5p | 2 | _....... | 8 | 87 |
| MIMAT0006775 | cel-miR-1833 | 2 | _....... | 8 | 87 |
| MIMAT0005287 | rno-miR-879-5p | 2 | _....... | 8 | 87 |
| MIMAT0004842 | mmu-miR-879-5p | 2 | _....... | 8 | 87 |
| MIMAT0037138 | ata-miR5200-5p | 8 | .a...... | 1 | 87 |
| MIMAT0034897 | efu-miR-9267 | 1 | ......c. | 8 | 87 |
| MIMAT0034033 | gra-miR8663b | 1 | ......a. | 8 | 87 |
| MIMAT0032733 | ssa-miR-7132b-3p | 1 | ......g. | 8 | 87 |
| MIMAT0022914 | ptc-miR473a-3p | 1 | ......c. | 8 | 87 |
| MIMAT0036295 | chi-miR-873-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036244 | chi-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035019 | efu-miR-9279b | 1 | ......__ | 6 | 75 |
| MIMAT0034617 | eca-miR-9072 | 8 | __...... | 3 | 75 |
| MIMAT0034514 | eca-miR-8977 | 3 | ......__ | 8 | 75 |
| MIMAT0034471 | eca-miR-8942 | 2 | __...... | 7 | 75 |
| MIMAT0033178 | ppc-miR-8319-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032828 | cel-miR-8205-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032684 | ssa-miR-736-5p | 1 | __...... | 6 | 75 |
| MIMAT0032676 | ssa-miR-727-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032284 | ssa-miR-103-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031541 | ppe-miR477-3p | 8 | __...... | 3 | 75 |
| MIMAT0030666 | prd-miR-7916-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030281 | bdi-miR7766-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032182 | pmi-miR-2008-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028962 | oan-miR-7408-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028823 | mdo-miR-7383-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028820 | mdo-miR-7382-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026315 | ccr-miR-727-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027949 | mmu-miR-7022-3p | 8 | __...... | 3 | 75 |
| MIMAT0027856 | mmu-miR-6977-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027850 | mmu-miR-6974-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027845 | mmu-miR-6971-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027795 | mmu-miR-6947-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027668 | hsa-miR-6884-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027655 | hsa-miR-6877-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027547 | hsa-miR-6823-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027430 | hsa-miR-6765-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025714 | gga-miR-6618-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025140 | mmu-miR-6391 | 1 | ......__ | 6 | 75 |
| MIMAT0024968 | hme-miR-282 | 7 | _......_ | 2 | 75 |
| MIMAT0024444 | mse-miR-282 | 7 | _......_ | 2 | 75 |
| MIMAT0024345 | mml-miR-2114 | 8 | _......_ | 3 | 75 |
| MIMAT0024102 | ggo-miR-485 | 2 | _......_ | 7 | 75 |
| MIMAT0024072 | ptr-miR-2114 | 8 | _......_ | 3 | 75 |
| MIMAT0023712 | hsa-miR-6087 | 1 | ......__ | 6 | 75 |
| MIMAT0023666 | ame-miR-6044 | 3 | _......_ | 8 | 75 |
| MIMAT0023010 | bra-miR5713 | 1 | __...... | 6 | 75 |
| MIMAT0022445 | ath-miR5643b | 1 | __...... | 6 | 75 |
| MIMAT0022404 | ath-miR5643a | 1 | __...... | 6 | 75 |
| MIMAT0022383 | mmu-miR-344h-5p | 2 | __...... | 7 | 75 |
| MIMAT0021988 | aca-miR-727-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021060 | gma-miR5037a | 6 | ......__ | 1 | 75 |
| MIMAT0021039 | hsa-miR-5008-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019712 | hsa-miR-4649-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019312 | oar-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019034 | hsa-miR-4419b | 1 | _......_ | 6 | 75 |
| MIMAT0019006 | hsa-miR-4478 | 1 | _......_ | 6 | 75 |
| MIMAT0018206 | hsa-miR-3929 | 1 | _......_ | 6 | 75 |
| MIMAT0018841 | tca-miR-3874-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016867 | hsa-miR-4316 | 3 | ......__ | 8 | 75 |
| MIMAT0017916 | aly-miR4228 | 7 | __...... | 2 | 75 |
| MIMAT0016593 | cin-miR-4052-5p | 2 | __...... | 7 | 75 |
| MIMAT0017855 | rno-miR-1188-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016236 | ppy-miR-1827 | 1 | ......__ | 6 | 75 |
| MIMAT0016038 | ppy-miR-596 | 6 | __...... | 1 | 75 |
| MIMAT0015902 | ppy-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017591 | aly-miR771-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014923 | mmu-miR-344e-5p | 2 | __...... | 7 | 75 |
| MIMAT0014864 | mmu-miR-3078-5p | 8 | __...... | 3 | 75 |
| MIMAT0014481 | tgu-miR-2971 | 8 | __...... | 3 | 75 |
| MIMAT0013782 | bmo-miR-306b | 1 | ......__ | 6 | 75 |
| MIMAT0013216 | eca-miR-421 | 7 | ......__ | 2 | 75 |
| MIMAT0013159 | eca-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012807 | ptr-miR-596 | 6 | __...... | 1 | 75 |
| MIMAT0013288 | mtr-miR2111g-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011802 | bta-miR-2294 | 1 | _......_ | 6 | 75 |
| MIMAT0012168 | sme-miR-753e-5p | 1 | __...... | 6 | 75 |
| MIMAT0011395 | sme-miR-753b-5p | 1 | __...... | 6 | 75 |
| MIMAT0011157 | hsa-miR-2114-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009435 | mmu-miR-1962 | 2 | _......_ | 7 | 75 |
| MIMAT0009328 | bta-miR-485 | 2 | _......_ | 7 | 75 |
| MIMAT0008386 | tca-miR-282-5p | 7 | _......_ | 2 | 75 |
| MIMAT0008052 | ptr-miR-1827 | 1 | ......__ | 6 | 75 |
| MIMAT0006767 | hsa-miR-1827 | 1 | ......__ | 6 | 75 |
| MIMAT0006725 | cfa-miR-485 | 2 | _......_ | 7 | 75 |
| MIMAT0006342 | mml-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007628 | gga-miR-1728-3p | 1 | __...... | 6 | 75 |
| MIMAT0007595 | gga-miR-1703-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007590 | gga-miR-1698 | 2 | _......_ | 7 | 75 |
| MIMAT0007575 | gga-miR-1686 | 3 | _......_ | 8 | 75 |
| MIMAT0007451 | gga-miR-1589 | 7 | _......_ | 2 | 75 |
| MIMAT0005892 | hsa-miR-1304-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003899 | ppt-miR477a-3p | 8 | __...... | 3 | 75 |
| MIMAT0004233 | cel-miR-798 | 7 | __...... | 2 | 75 |
| MIMAT0012122 | sme-miR-67-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012086 | sme-bantam-c-5p | 2 | __...... | 7 | 75 |
| MIMAT0003930 | ath-miR771 | 8 | _......_ | 3 | 75 |
| MIMAT0003756 | dre-miR-727-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003458 | mmu-miR-681 | 7 | _......_ | 2 | 75 |
| MIMAT0003264 | hsa-miR-596 | 6 | __...... | 1 | 75 |
| MIMAT0003203 | rno-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003128 | mmu-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0002175 | hsa-miR-485-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001320 | rno-miR-421-5p | 7 | ......__ | 2 | 75 |
| MIMAT0001046 | osa-miR168b | 1 | __...... | 6 | 75 |
| MIMAT0000346 | dme-miR-282-5p | 7 | _......_ | 2 | 75 |
