| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgagttac | 8 | ||
| MIMAT0005983 | mdv1-miR-M11-3p | 1 | ........ | 8 | 100 |
| MIMAT0035699 | bra-miR9569-5p | 1 | ......._ | 7 | 87 |
| MIMAT0014896 | mmu-miR-3087-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013541 | cte-miR-2688-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013533 | cte-miR-2685-3p | 7 | ......._ | 1 | 87 |
| MIMAT0007389 | gma-miR1527 | 7 | ......._ | 1 | 87 |
| MIMAT0007325 | gga-miR-1451-3p | 8 | _....... | 2 | 87 |
| MIMAT0005235 | smo-miR1084 | 7 | ......._ | 1 | 87 |
| MIMAT0020154 | dme-miR-4944-3p | 1 | .t...... | 8 | 87 |
| MIMAT0035668 | bra-miR9557-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035553 | dvi-miR-1006-5p | 2 | ......__ | 7 | 75 |
| MIMAT0034302 | cfa-miR-8812 | 3 | ......__ | 8 | 75 |
| MIMAT0034071 | gra-miR7584e | 3 | _......_ | 8 | 75 |
| MIMAT0034054 | gra-miR8683 | 8 | ......__ | 3 | 75 |
| MIMAT0033141 | ppc-miR-8307-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033008 | ppc-miR-8262-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032862 | ppc-miR-8216-5p | 3 | __...... | 8 | 75 |
| MIMAT0031771 | hbv-miR-B26-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030752 | prd-miR-7946-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030549 | prd-miR-7888-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032230 | lva-miR-2009-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032183 | pmi-miR-2009-3p | 1 | ......__ | 6 | 75 |
| MIMAT0029031 | gga-miR-7438-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028429 | mmu-miR-7230-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028378 | mml-miR-7206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028155 | ssc-miR-7140-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028134 | mmu-miR-7118-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027789 | mmu-miR-6944-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027783 | mmu-miR-6941-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027401 | hsa-miR-6750-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025646 | gga-miR-6569-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025581 | mmu-miR-6537-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025007 | hme-miR-6302-3p | 8 | ......__ | 3 | 75 |
| MIMAT0024956 | hme-miR-2765 | 8 | __...... | 3 | 75 |
| MIMAT0024470 | mse-miR-2765 | 8 | __...... | 3 | 75 |
| MIMAT0023551 | ame-miR-2765-5p | 8 | __...... | 3 | 75 |
| MIMAT0022232 | mtr-miR5563-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021877 | aca-miR-216b-3p | 3 | __...... | 8 | 75 |
| MIMAT0021691 | aca-miR-5393 | 2 | ......__ | 7 | 75 |
| MIMAT0019975 | hsa-miR-4798-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019915 | hsa-miR-4764-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019767 | hsa-miR-4682 | 3 | ......__ | 8 | 75 |
| MIMAT0019719 | hsa-miR-4653-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018939 | hsa-miR-4424 | 2 | _......_ | 7 | 75 |
| MIMAT0018496 | csi-miR3953 | 2 | ......__ | 7 | 75 |
| MIMAT0018892 | tca-miR-3895-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018630 | tca-miR-2765-5p | 8 | __...... | 3 | 75 |
| MIMAT0018059 | dme-miR-3643-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016801 | cin-miR-4005c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016471 | cin-miR-4004-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016469 | cin-miR-4003b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016467 | cin-miR-4005b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016465 | cin-miR-4003c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016463 | cin-miR-4005a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016461 | cin-miR-4003a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016963 | rlcv-miR-rL1-35-3p | 7 | __...... | 2 | 75 |
| MIMAT0016042 | ppy-miR-600 | 1 | __...... | 6 | 75 |
| MIMAT0016014 | ppy-miR-571 | 1 | ......__ | 6 | 75 |
| MIMAT0014899 | mmu-miR-3089-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014787 | api-miR-2765 | 8 | __...... | 3 | 75 |
| MIMAT0026958 | tgu-miR-1451-3p | 8 | __...... | 3 | 75 |
| MIMAT0014285 | aae-miR-2765 | 8 | __...... | 3 | 75 |
| MIMAT0013947 | ssc-miR-935 | 3 | __...... | 8 | 75 |
| MIMAT0012845 | rno-miR-935 | 3 | __...... | 8 | 75 |
| MIMAT0012805 | ptr-miR-571 | 1 | ......__ | 6 | 75 |
| MIMAT0013640 | bmo-miR-2765 | 8 | __...... | 3 | 75 |
| MIMAT0013570 | cte-miR-216c | 3 | __...... | 8 | 75 |
| MIMAT0013410 | mtr-miR2642 | 2 | ......__ | 7 | 75 |
| MIMAT0012526 | dsi-miR-983a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012467 | dsi-miR-1005-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012443 | dsi-miR-1006-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012311 | dps-miR-2523 | 8 | __...... | 3 | 75 |
| MIMAT0012251 | dps-miR-1006-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011622 | crm-miR-63-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011423 | sme-miR-2201-5p | 1 | __...... | 6 | 75 |
| MIMAT0009787 | nve-miR-2032b-3p | 8 | __...... | 3 | 75 |
| MIMAT0009785 | nve-miR-2032a-3p | 8 | __...... | 3 | 75 |
| MIMAT0009750 | spu-miR-2009 | 1 | ......__ | 6 | 75 |
| MIMAT0009385 | bta-miR-935 | 3 | __...... | 8 | 75 |
| MIMAT0032041 | dvi-miR-314-5p | 6 | __...... | 1 | 75 |
| MIMAT0008342 | ptr-miR-935 | 3 | __...... | 8 | 75 |
| MIMAT0006457 | mml-miR-600 | 1 | __...... | 6 | 75 |
| MIMAT0007505 | gga-miR-1632-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026775 | gga-miR-1559-3p | 1 | __...... | 6 | 75 |
| MIMAT0007406 | gga-miR-1551-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006115 | cin-miR-672 | 1 | ......__ | 6 | 75 |
| MIMAT0005856 | mmu-miR-1195 | 1 | ......__ | 6 | 75 |
| MIMAT0020903 | dme-miR-1006-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020897 | dme-miR-997-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004978 | hsa-miR-935 | 3 | __...... | 8 | 75 |
| MIMAT0004210 | mmu-miR-804 | 3 | ......__ | 8 | 75 |
| MIMAT0012104 | sme-miR-31a-3p | 2 | __...... | 7 | 75 |
| MIMAT0003424 | ebv-miR-BART13-3p | 7 | __...... | 2 | 75 |
| MIMAT0003236 | hsa-miR-571 | 1 | ......__ | 6 | 75 |
| MIMAT0001008 | ath-miR405d | 2 | ......__ | 7 | 75 |
| MIMAT0001007 | ath-miR405b | 2 | ......__ | 7 | 75 |
| MIMAT0001006 | ath-miR405a | 2 | ......__ | 7 | 75 |
| MIMAT0020840 | dme-miR-314-5p | 6 | __...... | 1 | 75 |
| MIMAT0015104 | cel-miR-63-5p | 8 | _......_ | 3 | 75 |
