Result for your query miRNA sequence
>tumv-miR-s54
ugcagug

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1tgcagtg7
MIMAT0036987tae-miR5301.......7100
MIMAT0034401cfa-miR-88937.......1100
MIMAT0032416ssa-miR-17-3p2.......8100
MIMAT0027515hsa-miR-6807-3p7.......1100
MIMAT0025694gga-miR-6600-3p1.......7100
MIMAT0018930hsa-miR-44187.......1100
MIMAT0013681bmo-miR-27851.......7100
MIMAT0012015bta-miR-24401.......7100
MIMAT0011980bta-miR-24161.......7100
MIMAT0011204gga-miR-21281.......7100
MIMAT0026823mml-miR-143-5p2.......8100
MIMAT0007606gga-miR-17112.......8100
MIMAT0007077oan-miR-1421o-3p7.......1100
MIMAT0026757oan-miR-1421j-3p8.......2100
MIMAT0006978oan-miR-1421h-3p7.......1100
MIMAT0026668mdo-miR-143-5p2.......8100
MIMAT0037189ata-miR408-3p8_......385
MIMAT0036927oha-miR-449c-5p3_......885
MIMAT0036925oha-miR-449a-5p3_......885
MIMAT0036909oha-miR-34c-5p3_......885
MIMAT0036907oha-miR-34a-5p3_......885
MIMAT0036823oha-miR-20a-3p6......_185
MIMAT0036752oha-miR-17-3p6......_185
MIMAT0036752oha-miR-17-3p3......_885
MIMAT0036575tch-miR-34c-5p3_......885
MIMAT0036510tch-miR-34a-5p3_......885
MIMAT0036234chi-miR-449c3_......885
MIMAT0036232chi-miR-449b-5p3_......885
MIMAT0036230chi-miR-449a-5p3_......885
MIMAT0036169chi-miR-34c-5p3_......885
MIMAT0036167chi-miR-34b-5p3_......885
MIMAT0036166chi-miR-34a3_......885
MIMAT0036055chi-miR-20a-3p6......_185
MIMAT0035999chi-miR-17-3p6......_185
MIMAT0035999chi-miR-17-3p3......_885
MIMAT0035963chi-miR-143-5p3......_885
MIMAT0035525bdi-miR444d1......_685
MIMAT0035524bdi-miR444c1......_685
MIMAT0035523bdi-miR444b1......_685
MIMAT0035235hbr-miR93863......_885
MIMAT0035108efu-miR-4493_......885
MIMAT0035051efu-miR-3247_......285
MIMAT0035037efu-miR-34a3_......885
MIMAT0034999efu-miR-176......_185
MIMAT0034999efu-miR-173......_885
MIMAT0034962efu-miR-9186n3......_885
MIMAT0034757eca-miR-91773_......885
MIMAT0034730eca-miR-91543......_885
MIMAT0034578eca-miR-90366......_185
MIMAT0034490eca-miR-449b3_......885
MIMAT0034393cfa-miR-65163......_885
MIMAT0033502str-miR-34c-5p3_......885
MIMAT0033486str-miR-34b-5p3_......885
MIMAT0033484str-miR-34a-5p3_......885
MIMAT0032973ppc-miR-8252a-3p6_......185
MIMAT0032778ath-miR81798......_385
MIMAT0032715ssa-miR-93a-2-3p6......_185
MIMAT0032714ssa-miR-93a-3p6......_185
MIMAT0032639ssa-miR-449b-5p3_......885
MIMAT0032637ssa-miR-449a-5p3_......885
MIMAT0032507ssa-miR-20b-3p6......_185
MIMAT0032507ssa-miR-20b-3p3......_885
MIMAT0032505ssa-miR-20a-3-3p6......_185
MIMAT0032505ssa-miR-20a-3-3p3......_885
MIMAT0032504ssa-miR-20a-2-3p6......_185
MIMAT0032504ssa-miR-20a-2-3p3......_885
MIMAT0032503ssa-miR-20a-1-3p6......_185
MIMAT0032415ssa-miR-17-3-3p6......_185
MIMAT0032415ssa-miR-17-3-3p3......_885
MIMAT0032365ssa-miR-143-5p3......_885
MIMAT0032289ssa-miR-106b-3p3......_885
MIMAT0031733bbe-miR-4856a-5p3_......885
MIMAT0031731bbe-miR-34h-5p3_......885
MIMAT0031730bbe-miR-34g-5p1_......685
MIMAT0031675bbe-miR-34f-5p3_......885
MIMAT0031674bbe-miR-34d-5p3_......885
MIMAT0031673bbe-miR-34c-5p3_......885
MIMAT0031671bbe-miR-34b-5p3_......885
MIMAT0031670bbe-miR-34a-5p3_......885
MIMAT0031340stu-miR408b-3p8_......385
MIMAT0030565prd-miR-7891-3p3_......885
MIMAT0030494prd-miR-34-5p3_......885
MIMAT0030443bta-miR-65163......_885
MIMAT0030417hsa-miR-6516-5p3......_885
MIMAT0030340hhi-miR-4493_......885
MIMAT0032149pmi-miR-34-5p3_......885
MIMAT0029738cbn-miR-76383_......885
MIMAT0029737cbn-miR-1824b3_......885
MIMAT0029736cbn-miR-1824a3_......885
MIMAT0029504ipu-miR-34b3_......885
MIMAT0029503ipu-miR-34a3_......885
MIMAT0029462ipu-miR-20a6......_185
MIMAT0029462ipu-miR-20a3......_885
MIMAT0029435ipu-miR-17b6......_185
MIMAT0029435ipu-miR-17b3......_885
MIMAT0029434ipu-miR-17a6......_185
MIMAT0029434ipu-miR-17a3......_885
MIMAT0028988oan-miR-34b-5p3_......885
MIMAT0028588mdo-miR-34b-5p3_......885
MIMAT0028586mdo-miR-34c-5p3_......885
MIMAT0028580mdo-miR-449c-5p3_......885
MIMAT0026292ccr-miR-343_......885
MIMAT0026266ccr-miR-20a-3p6......_185
MIMAT0026266ccr-miR-20a-3p3......_885
MIMAT0026237ccr-miR-17-3p6......_185
MIMAT0026237ccr-miR-17-3p3......_885
MIMAT0027981mmu-miR-7038-3p6_......185
MIMAT0027741mmu-miR-6920-3p6_......185
MIMAT0027681hsa-miR-6890-3p7_......285
MIMAT0025780gga-miR-6677-5p8_......385
MIMAT0025703gga-miR-6608-3p8_......385
MIMAT0025699gga-miR-6605-5p6......_185
MIMAT0027343mmu-miR-6516-5p3......_885
MIMAT0025451hsa-miR-6499-3p2_......785
MIMAT0025174mmu-miR-6418-3p6......_185
MIMAT0024983hme-miR-343_......885
MIMAT0024720nta-miR4088_......385
MIMAT0024534cca-miR4088_......385
MIMAT0024475mse-miR-343_......885
MIMAT0024226ggo-miR-34b3_......885
MIMAT0024123ggo-miR-34c3_......885
MIMAT0024071ptr-miR-449c3_......885
MIMAT0023929cgr-miR-34c-5p3_......885
MIMAT0023927cgr-miR-34b-5p3_......885
MIMAT0023926cgr-miR-34a3_......885
MIMAT0023910cgr-miR-324-3p7_......285
MIMAT0023796cgr-miR-17-3p6......_185
MIMAT0023796cgr-miR-17-3p3......_885
MIMAT0023428hco-miR-40e6......_185
MIMAT0022608ola-miR-455-3p1......_685
MIMAT0023096tur-miR-34-5p3_......885
MIMAT0022486hsa-miR-56931_......685
MIMAT0022262zma-miR444b1......_685
MIMAT0022261zma-miR444a1......_685
MIMAT0022014aca-miR-449c-5p3_......885
MIMAT0021959aca-miR-449b3_......885
MIMAT0021958aca-miR-449a3_......885
MIMAT0021943aca-miR-34c-5p3_......885
MIMAT0021941aca-miR-34b-5p3_......885
MIMAT0021939aca-miR-34a-5p3_......885
MIMAT0021862aca-miR-20a-3p6......_185
MIMAT0021804aca-miR-17-3p6......_185
MIMAT0021804aca-miR-17-3p3......_885
MIMAT0021769aca-miR-143-5p3......_885
MIMAT0021437asu-miR-34-5p3_......885
MIMAT0020286ssp-miR444c-3p1......_685
MIMAT0020285ssp-miR444b.21......_685
MIMAT0020283ssp-miR444a1......_685
MIMAT0022747xtr-miR-449c-5p3_......885
MIMAT0022745xtr-miR-449b-5p3_......885
MIMAT0022742hsa-miR-1273g-3p8_......385
MIMAT0020543hvu-miR444b1......_685
MIMAT0021013gma-miR49953_......885
MIMAT0020998gma-miR408d8_......385
MIMAT0020139cel-miR-49333_......885
MIMAT0020497bfl-miR-34e3_......885
MIMAT0020496bfl-miR-34d3_......885
MIMAT0020082bfl-miR-4856a3_......885
MIMAT0019647pma-miR-46133_......885
MIMAT0019598pma-miR-45663......_885
MIMAT0019472pma-miR-143-5p3......_885
MIMAT0019396pma-miR-20a-3p6......_185
MIMAT0019384pma-miR-17a-3p6......_185
MIMAT0019384pma-miR-17a-3p3......_885
MIMAT0019056hsa-miR-45193_......885
MIMAT0018435nlo-miR-342_......785
MIMAT0018390ngi-miR-342_......785
MIMAT0018682tca-miR-3827-5p7_......285
MIMAT0016928tgu-miR-34c-5p3_......885
MIMAT0016668cin-miR-4091-5p3_......885
MIMAT0016499cin-miR-4008c-5p3_......885
MIMAT0016497cin-miR-4008b-5p3_......885
MIMAT0017803rno-miR-449c-5p3_......885
MIMAT0015892ppy-miR-449b3_......885
MIMAT0015891ppy-miR-449a3_......885
MIMAT0015742ppy-miR-34c-5p3_......885
MIMAT0015682nvi-miR-343_......885
MIMAT0014733api-miR-343_......885
MIMAT0014610tgu-miR-455-3p1......_685
MIMAT0014598tgu-miR-34a3_......885
MIMAT0027016tgu-miR-106-3p6......_185
MIMAT0027016tgu-miR-106-3p3......_885
MIMAT0014579tgu-miR-217-5p8......_385
MIMAT0014564tgu-miR-17a-3p6......_185
MIMAT0014564tgu-miR-17a-3p3......_885
MIMAT0026998tgu-miR-20a-3p6......_185
MIMAT0014537tgu-miR-34b3_......885
MIMAT0014245aae-miR-34-5p3_......885
MIMAT0014101bma-miR-343_......885
MIMAT0013916ssc-miR-34c3_......885
MIMAT0017374ssc-miR-143-5p3......_885
MIMAT0013102eca-miR-449a3_......885
MIMAT0013034eca-miR-324-3p7_......285
MIMAT0012992eca-miR-34c3_......885
MIMAT0012990eca-miR-34b-5p3_......885
MIMAT0012917eca-miR-34a3_......885
MIMAT0012663dpu-miR-343_......885
MIMAT0013306mtr-miR2602b3_......885
MIMAT0013305mtr-miR2602a3_......885
MIMAT0012320dps-miR-25317_......285
MIMAT0011923bta-miR-23776......_185
MIMAT0011727ppc-miR-22393_......885
MIMAT0011624crm-miR-22273_......885
MIMAT0011538crm-miR-343_......885
MIMAT0011488cbr-miR-22273_......885
MIMAT0019174bfl-miR-34b-5p3_......885
MIMAT0009838cfa-miR-34b3_......885
MIMAT0009659spu-miR-343_......885
MIMAT0009616sko-miR-34-5p3_......885
MIMAT0009569lgi-miR-343_......885
MIMAT0009516cte-miR-343_......885
MIMAT0009475bfl-miR-34a3_......885
MIMAT0009425mmu-miR-19546......_185
MIMAT0017340mmu-miR-1930-3p3......_885
MIMAT0009322bta-miR-449c3_......885
MIMAT0009321bta-miR-449b3_......885
MIMAT0009320bta-miR-449a3_......885
MIMAT0009081dya-miR-343_......885
MIMAT0008983dwi-miR-343_......885
MIMAT0008955dvi-miR-34-5p3_......885
MIMAT0008840dsi-miR-343_......885
MIMAT0008787dse-miR-343_......885
MIMAT0008715dpe-miR-343_......885
MIMAT0008656dmo-miR-343_......885
MIMAT0008619dgr-miR-343_......885
MIMAT0008508der-miR-343_......885
MIMAT0008439dan-miR-343_......885
MIMAT0008364tca-miR-34-5p3_......885
MIMAT0008150ptr-miR-449b3_......885
MIMAT0008149ptr-miR-449a3_......885
MIMAT0007766osa-miR1847.11......_685
MIMAT0007757ssc-miR-34a3_......885
MIMAT0015268ssc-miR-17-3p6......_185
MIMAT0015268ssc-miR-17-3p3......_885
MIMAT0006693cfa-miR-34c3_......885
MIMAT0006690cfa-miR-34a3_......885
MIMAT0006649cfa-miR-176......_185
MIMAT0006649cfa-miR-173......_885
MIMAT0006591cel-miR-1824-5p3_......885
MIMAT0006331mml-miR-449b-5p3_......885
MIMAT0006330mml-miR-449a-5p3_......885
MIMAT0006175mml-miR-34c-5p3_......885
MIMAT0007743gga-miR-449b-5p3_......885
MIMAT0007602gga-miR-449c-5p3_......885
MIMAT0007455gga-miR-15926_......185
MIMAT0006122csa-miR-343_......885
MIMAT0006094cin-miR-34-5p3_......885
MIMAT0006049odi-miR-14963_......885
MIMAT0006043odi-miR-1490b3_......885
MIMAT0006042odi-miR-1490a3_......885
MIMAT0006040odi-miR-14873_......885
MIMAT0006035odi-miR-1483-5p3_......885
MIMAT0007310oan-miR-1421ak-3p6......_185
MIMAT0005976osa-miR444f1......_685
MIMAT0005975osa-miR444e1......_685
MIMAT0005973osa-miR444d.21......_685
MIMAT0005970osa-miR444c.21......_685
MIMAT0005968osa-miR444b.21......_685
MIMAT0007279oan-miR-17-3p6......_185
MIMAT0007279oan-miR-17-3p3......_885
MIMAT0007153oan-miR-191-3p3......_885
MIMAT0009169oan-miR-20a-2-3p6......_185
MIMAT0007146oan-miR-20a-1-3p6......_185
MIMAT0007108oan-miR-34a-5p3_......885
MIMAT0007015oan-miR-449a3_......885
MIMAT0007013oan-miR-449b-5p3_......885
MIMAT0007012oan-miR-449c3_......885
MIMAT0006850oan-miR-106-3p6......_185
MIMAT0005526aga-miR-343_......885
MIMAT0017295rno-miR-17-2-3p6......_185
MIMAT0005290rno-miR-883-3p8......_385
MIMAT0005244smo-miR10913_......885
MIMAT0005228smo-miR4088_......385
MIMAT0005050ppt-miR408b8_......385
MIMAT0020904dme-miR-1007-5p1_......685
MIMAT0004430ame-miR-343_......885
MIMAT0005447mmu-miR-449b3_......885
MIMAT0004851mmu-miR-883b-3p8......_385
MIMAT0004849mmu-miR-883a-3p8......_385
MIMAT0004340bta-miR-34a3_......885
MIMAT0026707mdo-miR-20a-3p6......_185
MIMAT0004166mdo-miR-17-3p6......_185
MIMAT0004166mdo-miR-17-3p3......_885
MIMAT0004140mdo-miR-449a-5p3_......885
MIMAT0004096mdo-miR-34a-5p3_......885
MIMAT0003854bta-miR-34c3_......885
MIMAT0003816bta-miR-17-3p6......_185
MIMAT0003816bta-miR-17-3p3......_885
MIMAT0004197bmo-miR-34-5p3_......885
MIMAT0003704xtr-miR-449a-5p3_......885
MIMAT0003670xtr-miR-20a-3p6......_185
MIMAT0003578xtr-miR-34a3_......885
MIMAT0003565xtr-miR-17-3p6......_185
MIMAT0003565xtr-miR-17-3p3......_885
MIMAT0003759dre-miR-34c-5p3_......885
MIMAT0003549bta-miR-34b3_......885
MIMAT0003460mmu-miR-449c-5p3_......885
MIMAT0003372gga-miR-449a3_......885
MIMAT0006788gga-miR-455-3p1......_685
MIMAT0003327hsa-miR-449b-5p3_......885
MIMAT0003212rno-miR-20b-3p6......_185
MIMAT0003212rno-miR-20b-3p3......_885
MIMAT0004788mmu-miR-20b-3p6......_185
MIMAT0004788mmu-miR-20b-3p3......_885
MIMAT0026604mml-miR-106a-3p6......_185
MIMAT0002722mne-miR-17-3p6......_185
MIMAT0002722mne-miR-17-3p3......_885
MIMAT0002715lla-miR-17-3p6......_185
MIMAT0002715lla-miR-17-3p3......_885
MIMAT0002708sla-miR-17-3p6......_185
MIMAT0002708sla-miR-17-3p3......_885
MIMAT0026597mml-miR-20a-3p6......_185
MIMAT0002701mml-miR-17-3p6......_185
MIMAT0002701mml-miR-17-3p3......_885
MIMAT0002694ptr-miR-17-3p6......_185
MIMAT0002694ptr-miR-17-3p3......_885
MIMAT0002687ppy-miR-17-3p6......_185
MIMAT0002687ppy-miR-17-3p3......_885
MIMAT0002680ppa-miR-17-3p6......_185
MIMAT0002680ppa-miR-17-3p3......_885
MIMAT0002673age-miR-17-3p6......_185
MIMAT0002673age-miR-17-3p3......_885
MIMAT0002666lca-miR-17-3p6......_185
MIMAT0002666lca-miR-17-3p3......_885
MIMAT0002659ggo-miR-17-3p6......_185
MIMAT0002659ggo-miR-17-3p3......_885
MIMAT0002502mne-miR-34a3_......885
MIMAT0002501lla-miR-34a3_......885
MIMAT0002500sla-miR-34a3_......885
MIMAT0002499mml-miR-34a-5p3_......885
MIMAT0002498ptr-miR-34a3_......885
MIMAT0002497ppy-miR-34a3_......885
MIMAT0002496ppa-miR-34a3_......885
MIMAT0002495age-miR-34a3_......885
MIMAT0002494ggo-miR-34a3_......885
MIMAT0003400dre-miR-20a-3p6......_185
MIMAT0003400dre-miR-20a-3p3......_885
MIMAT0031939dre-miR-20b-3p6......_185
MIMAT0031938dre-miR-17a-2-3p6......_185
MIMAT0031938dre-miR-17a-2-3p3......_885
MIMAT0003396dre-miR-17a-3p6......_185
MIMAT0003396dre-miR-17a-3p3......_885
MIMAT0005790osa-miR444a-3p.21......_685
MIMAT0001544cfa-miR-449a3_......885
MIMAT0001543rno-miR-449a-5p3_......885
MIMAT0001542mmu-miR-449a-5p3_......885
MIMAT0001541hsa-miR-449a3_......885
MIMAT0001269dre-miR-34a3_......885
MIMAT0001223dps-miR-343_......885
MIMAT0001180gga-miR-34c-5p3_......885
MIMAT0001173gga-miR-34a-5p3_......885
MIMAT0026517gga-miR-106-3p6......_185
MIMAT0026517gga-miR-106-3p3......_885
MIMAT0001115gga-miR-17-3p6......_185
MIMAT0001115gga-miR-17-3p3......_885
MIMAT0022883osa-miR166i-5p3......_885
MIMAT0017129rno-miR-143-5p3......_885
MIMAT0000815rno-miR-34a-5p3_......885
MIMAT0000814rno-miR-34c-5p3_......885
MIMAT0000813rno-miR-34b-5p3_......885
MIMAT0004710rno-miR-17-1-3p6......_185
MIMAT0004710rno-miR-17-1-3p3......_885
MIMAT0000686hsa-miR-34c-5p3_......885
MIMAT0000650mmu-miR-17-3p6......_185
MIMAT0000650mmu-miR-17-3p3......_885
MIMAT0000603rno-miR-20a-3p6......_185
MIMAT0000556mmu-miR-324-3p7_......285
MIMAT0000554rno-miR-324-3p7_......285
MIMAT0000542mmu-miR-34a-5p3_......885
MIMAT0004627mmu-miR-20a-3p6......_185
MIMAT0000466cbr-miR-343_......885
MIMAT0004599hsa-miR-143-5p3......_885
MIMAT0017009mmu-miR-106a-3p6......_185
MIMAT0017009mmu-miR-106a-3p3......_885
MIMAT0000382mmu-miR-34b-5p3_......885
MIMAT0000381mmu-miR-34c-5p3_......885
MIMAT0000350dme-miR-34-5p3_......885
MIMAT0020777cel-miR-232-5p3......_885
MIMAT0000255hsa-miR-34a-5p3_......885
MIMAT0017006mmu-miR-143-5p3......_885
MIMAT0004493hsa-miR-20a-3p6......_185
MIMAT0000071hsa-miR-17-3p6......_185
MIMAT0000071hsa-miR-17-3p3......_885
MIMAT0000005cel-miR-34-5p3_......885