| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgcctccc | 8 | ||
| MIMAT0028178 | dev-miR-D8-5p | 1 | ........ | 8 | 100 |
| MIMAT0027457 | hsa-miR-6778-3p | 1 | ........ | 8 | 100 |
| MIMAT0036897 | oha-miR-31-5p | 7 | ......._ | 1 | 87 |
| MIMAT0035830 | bra-miR162-5p | 7 | ......._ | 1 | 87 |
| MIMAT0031281 | stu-miR162b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0031279 | stu-miR162a-5p | 7 | ......._ | 1 | 87 |
| MIMAT0027971 | mmu-miR-7033-3p | 1 | ......._ | 7 | 87 |
| MIMAT0027860 | mmu-miR-6979-5p | 8 | _....... | 2 | 87 |
| MIMAT0027575 | hsa-miR-6836-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027559 | hsa-miR-6829-3p | 1 | ......._ | 7 | 87 |
| MIMAT0027483 | hsa-miR-6791-3p | 1 | ......._ | 7 | 87 |
| MIMAT0025654 | gga-miR-6573-3p | 7 | ......._ | 1 | 87 |
| MIMAT0024258 | ggo-miR-3612 | 8 | ......._ | 2 | 87 |
| MIMAT0017989 | hsa-miR-3612 | 8 | ......._ | 2 | 87 |
| MIMAT0016083 | ppy-miR-650 | 8 | ......._ | 2 | 87 |
| MIMAT0017447 | aly-miR162b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0017445 | aly-miR162a-5p | 7 | ......._ | 1 | 87 |
| MIMAT0015576 | bmo-miR-3382-3p | 1 | ......._ | 7 | 87 |
| MIMAT0015458 | bmo-miR-3273 | 1 | ......._ | 7 | 87 |
| MIMAT0017388 | csi-miR162-5p | 8 | ......._ | 2 | 87 |
| MIMAT0008301 | ptr-miR-650 | 8 | ......._ | 2 | 87 |
| MIMAT0006490 | mml-miR-650c | 8 | ......._ | 2 | 87 |
| MIMAT0006489 | mml-miR-650b | 8 | ......._ | 2 | 87 |
| MIMAT0006488 | mml-miR-650a | 8 | ......._ | 2 | 87 |
| MIMAT0004094 | mdo-miR-31-5p | 7 | ......._ | 1 | 87 |
| MIMAT0003499 | mmu-miR-709 | 7 | ......._ | 1 | 87 |
| MIMAT0003320 | hsa-miR-650 | 8 | ......._ | 2 | 87 |
| MIMAT0031877 | ath-miR162b-5p | 8 | ......._ | 2 | 87 |
| MIMAT0031876 | ath-miR162a-5p | 8 | ......._ | 2 | 87 |
| MIMAT0032969 | ppc-miR-8251-3p | 1 | ......g. | 8 | 87 |
| MIMAT0029953 | osa-miR1437b-5p | 8 | .t...... | 1 | 87 |
| MIMAT0027850 | mmu-miR-6974-5p | 8 | ......a. | 1 | 87 |
| MIMAT0017795 | rno-miR-3541 | 1 | .c...... | 8 | 87 |
| MIMAT0036809 | oha-miR-202-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036271 | chi-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0036131 | chi-miR-30f-3p | 8 | __...... | 3 | 75 |
| MIMAT0036124 | chi-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0036081 | chi-miR-2290 | 2 | ......__ | 7 | 75 |
| MIMAT0035070 | efu-miR-9329 | 3 | ......__ | 8 | 75 |
| MIMAT0034682 | eca-miR-9131 | 7 | _......_ | 2 | 75 |
| MIMAT0034376 | cfa-miR-8876 | 2 | ......__ | 7 | 75 |
| MIMAT0034367 | cfa-miR-8870 | 1 | ......__ | 6 | 75 |
| MIMAT0034362 | cfa-miR-8865 | 1 | __...... | 6 | 75 |
| MIMAT0034154 | gra-miR8771c | 8 | __...... | 3 | 75 |
| MIMAT0034033 | gra-miR8663b | 7 | ......__ | 2 | 75 |
| MIMAT0033228 | ppc-miR-8341-3p | 2 | _......_ | 7 | 75 |
| MIMAT0033013 | ppc-miR-8264-3p | 6 | __...... | 1 | 75 |
| MIMAT0030562 | prd-miR-7911c-5p | 3 | __...... | 8 | 75 |
| MIMAT0030450 | bta-miR-7865 | 8 | __...... | 3 | 75 |
| MIMAT0030415 | hsa-miR-1273h-5p | 8 | __...... | 3 | 75 |
| MIMAT0029908 | mmu-miR-7689-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028972 | oan-miR-1421an-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028694 | mdo-miR-7342-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028551 | mdo-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0028492 | mdo-miR-7263-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026089 | cme-miR477a | 2 | __...... | 7 | 75 |
| MIMAT0028124 | hsa-miR-7113-3p | 1 | __...... | 6 | 75 |
| MIMAT0028109 | hsa-miR-7106-5p | 7 | __...... | 2 | 75 |
| MIMAT0028058 | mmu-miR-7076-5p | 8 | __...... | 3 | 75 |
| MIMAT0028056 | mmu-miR-7075-5p | 8 | __...... | 3 | 75 |
| MIMAT0028028 | mmu-miR-7062-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027964 | mmu-miR-7030-5p | 8 | __...... | 3 | 75 |
| MIMAT0027936 | mmu-miR-7016-5p | 8 | __...... | 3 | 75 |
| MIMAT0027836 | mmu-miR-6967-5p | 8 | __...... | 3 | 75 |
| MIMAT0027827 | mmu-miR-6963-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027758 | mmu-miR-6929-5p | 7 | __...... | 2 | 75 |
| MIMAT0027666 | hsa-miR-6883-5p | 7 | __...... | 2 | 75 |
| MIMAT0027550 | hsa-miR-6825-5p | 8 | __...... | 3 | 75 |
| MIMAT0027498 | hsa-miR-6799-5p | 7 | __...... | 2 | 75 |
| MIMAT0027470 | hsa-miR-6785-5p | 7 | __...... | 2 | 75 |
| MIMAT0027463 | hsa-miR-6781-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027460 | hsa-miR-6780a-5p | 8 | __...... | 3 | 75 |
| MIMAT0027458 | hsa-miR-6779-5p | 8 | __...... | 3 | 75 |
| MIMAT0027399 | hsa-miR-6749-3p | 3 | __...... | 8 | 75 |
| MIMAT0027347 | blv-miR-B4-5p | 8 | __...... | 3 | 75 |
| MIMAT0025836 | gga-miR-6599-5p | 8 | __...... | 3 | 75 |
| MIMAT0025827 | gga-miR-6543-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025742 | gga-miR-6645-5p | 7 | __...... | 2 | 75 |
| MIMAT0025666 | gga-miR-6579-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025140 | mmu-miR-6391 | 7 | ......__ | 2 | 75 |
| MIMAT0027315 | ppe-miR482d-3p | 1 | __...... | 6 | 75 |
| MIMAT0024571 | bta-miR-149-3p | 8 | __...... | 3 | 75 |
| MIMAT0024385 | ppy-miR-1273e | 6 | ......__ | 1 | 75 |
| MIMAT0023982 | cgr-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0023781 | cgr-miR-149-3p | 8 | __...... | 3 | 75 |
| MIMAT0023714 | hsa-miR-6089 | 6 | _......_ | 1 | 75 |
| MIMAT0023366 | hco-miR-5910 | 1 | __...... | 6 | 75 |
| MIMAT0022367 | mmu-miR-5620-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021850 | aca-miR-202-3p.1 | 7 | ......__ | 2 | 75 |
| MIMAT0019899 | hsa-miR-4756-5p | 8 | __...... | 3 | 75 |
| MIMAT0019868 | hsa-miR-4739 | 8 | __...... | 3 | 75 |
| MIMAT0019849 | hsa-miR-4728-5p | 7 | __...... | 2 | 75 |
| MIMAT0019788 | hsa-miR-4695-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019645 | pma-miR-4611 | 6 | __...... | 1 | 75 |
| MIMAT0019008 | hsa-miR-3689d | 6 | __...... | 1 | 75 |
| MIMAT0019007 | hsa-miR-3689c | 8 | __...... | 3 | 75 |
| MIMAT0018961 | hsa-miR-4443 | 8 | _......_ | 3 | 75 |
| MIMAT0018475 | csi-miR477a | 2 | __...... | 7 | 75 |
| MIMAT0018181 | hsa-miR-3689b-3p | 8 | __...... | 3 | 75 |
| MIMAT0018832 | tca-miR-3870-5p | 8 | ......__ | 3 | 75 |
| MIMAT0018608 | ame-miR-3739 | 8 | __...... | 3 | 75 |
| MIMAT0018118 | hsa-miR-3689a-3p | 8 | __...... | 3 | 75 |
| MIMAT0017896 | rno-miR-3593-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017875 | rno-miR-3584-5p | 6 | __...... | 1 | 75 |
| MIMAT0016383 | gga-miR-3532-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016236 | ppy-miR-1827 | 7 | ......__ | 2 | 75 |
| MIMAT0016202 | ppy-miR-1281 | 3 | _......_ | 8 | 75 |
| MIMAT0015988 | ppy-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0015082 | hsa-miR-3197 | 6 | _......_ | 1 | 75 |
| MIMAT0019207 | hsa-miR-3152-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013941 | ssc-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0013782 | bmo-miR-306b | 7 | ......__ | 2 | 75 |
| MIMAT0013244 | eca-miR-764-3p | 7 | _......_ | 2 | 75 |
| MIMAT0013236 | eca-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0017370 | rno-miR-764-3p | 8 | _......_ | 3 | 75 |
| MIMAT0013496 | mtr-miR2675 | 7 | ......__ | 2 | 75 |
| MIMAT0011203 | gga-miR-2127 | 7 | __...... | 2 | 75 |
| MIMAT0011161 | hsa-miR-2116-3p | 1 | __...... | 6 | 75 |
| MIMAT0032101 | gma-miR2109-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009962 | bta-miR-1281 | 3 | _......_ | 8 | 75 |
| MIMAT0009459 | mmu-miR-1982-5p | 8 | __...... | 3 | 75 |
| MIMAT0009408 | mmu-miR-1943-5p | 8 | __...... | 3 | 75 |
| MIMAT0009132 | pta-miR1315 | 7 | _......_ | 2 | 75 |
| MIMAT0008213 | ptr-miR-532 | 1 | __...... | 6 | 75 |
| MIMAT0008052 | ptr-miR-1827 | 7 | ......__ | 2 | 75 |
| MIMAT0008000 | ptr-miR-1281 | 3 | _......_ | 8 | 75 |
| MIMAT0026917 | hsa-miR-1910-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015269 | ssc-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0006767 | hsa-miR-1827 | 7 | ......__ | 2 | 75 |
| MIMAT0006404 | mml-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0026827 | mml-miR-149-3p | 8 | __...... | 3 | 75 |
| MIMAT0026808 | mml-miR-33b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026783 | gga-miR-1759-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007575 | gga-miR-1686 | 7 | _......_ | 2 | 75 |
| MIMAT0007481 | gga-miR-1614-3p | 8 | __...... | 3 | 75 |
| MIMAT0006095 | cin-miR-78 | 7 | _......_ | 2 | 75 |
| MIMAT0006015 | pta-miR482d | 2 | __...... | 7 | 75 |
| MIMAT0007225 | oan-miR-1408 | 8 | __...... | 3 | 75 |
| MIMAT0007182 | oan-miR-802-3p | 7 | __...... | 2 | 75 |
| MIMAT0007044 | oan-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0006979 | oan-miR-1421i-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005952 | hsa-miR-1321 | 8 | __...... | 3 | 75 |
| MIMAT0005939 | hsa-miR-1281 | 3 | _......_ | 8 | 75 |
| MIMAT0005323 | rno-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0005252 | smo-miR1096 | 2 | ......__ | 7 | 75 |
| MIMAT0004410 | rrv-miR-rR1-4-5p | 8 | __...... | 3 | 75 |
| MIMAT0012534 | bta-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0003900 | ppt-miR1211-5p | 7 | __...... | 2 | 75 |
| MIMAT0003895 | mmu-miR-764-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003355 | gga-miR-202-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032008 | dre-miR-139-3p | 8 | __...... | 3 | 75 |
| MIMAT0003074 | tni-miR-202 | 7 | ......__ | 2 | 75 |
| MIMAT0003073 | fru-miR-202 | 7 | ......__ | 2 | 75 |
| MIMAT0004781 | mmu-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0004780 | hsa-miR-532-3p | 1 | __...... | 6 | 75 |
| MIMAT0026563 | mml-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0001864 | dre-miR-202-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004609 | hsa-miR-149-3p | 7 | __...... | 2 | 75 |
| MIMAT0004589 | hsa-miR-30b-3p | 8 | __...... | 3 | 75 |
| MIMAT0016990 | mmu-miR-149-3p | 8 | __...... | 3 | 75 |
| MIMAT0000050 | cel-miR-78 | 7 | _......_ | 2 | 75 |
