VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rhcmv-miR-rh159
ugccuuau

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`tgccttat`	8
MIMAT0036671	oha-miR-124-4-3p	7	`......._`	1	87
MIMAT0036670	oha-miR-124-3p	7	`......._`	1	87
MIMAT0036668	oha-miR-124	7	`......._`	1	87
MIMAT0035922	chi-miR-124a	7	`......._`	1	87
MIMAT0035293	gsa-miR-124b-3p	7	`......._`	1	87
MIMAT0035275	gsa-miR-124a-3p	7	`......._`	1	87
MIMAT0035131	efu-miR-124	8	`......._`	2	87
MIMAT0033481	str-miR-8395-3p	7	`......._`	1	87
MIMAT0033439	str-miR-124-3p	7	`......._`	1	87
MIMAT0033361	str-miR-8370-3p	7	`......._`	1	87
MIMAT0032963	ppc-miR-8249-3p	7	`......._`	1	87
MIMAT0031578	bbe-miR-124-3p	7	`......._`	1	87
MIMAT0030787	prd-miR-124-3p	7	`......._`	1	87
MIMAT0032204	lva-miR-124-3p	7	`......._`	1	87
MIMAT0032157	pmi-miR-124-3p	7	`......._`	1	87
MIMAT0029752	cbn-miR-124	7	`......._`	1	87
MIMAT0029644	crm-miR-124b	7	`......._`	1	87
MIMAT0029608	cbr-miR-124c	7	`......._`	1	87
MIMAT0029607	cbr-miR-124b	7	`......._`	1	87
MIMAT0029396	ipu-miR-124a	7	`......._`	1	87
MIMAT0028171	dev-miR-D2-3p	7	`_.......`	1	87
MIMAT0026405	sbi-miR6220-3p	2	`......._`	8	87
MIMAT0025585	mmu-miR-6540-5p	8	`......._`	2	87
MIMAT0025431	pol-miR-124-3p	7	`......._`	1	87
MIMAT0025026	sma-miR-124a-3p	7	`......._`	1	87
MIMAT0024937	hme-miR-124	7	`......._`	1	87
MIMAT0024474	mse-miR-124	7	`......._`	1	87
MIMAT0023740	cgr-miR-124	7	`......._`	1	87
MIMAT0023338	hco-miR-124	7	`......._`	1	87
MIMAT0022573	ola-miR-124-3p	7	`......._`	1	87
MIMAT0023089	tur-miR-124-3p	7	`......._`	1	87
MIMAT0022378	mmu-miR-5624-3p	8	`......._`	2	87
MIMAT0021726	aca-miR-124b	7	`......._`	1	87
MIMAT0021725	aca-miR-124a	7	`......._`	1	87
MIMAT0021496	asu-miR-124-3p	7	`......._`	1	87
MIMAT0020267	emu-miR-124b	7	`......._`	1	87
MIMAT0020266	emu-miR-124a	7	`......._`	1	87
MIMAT0020242	egr-miR-124b-3p	7	`......._`	1	87
MIMAT0020240	egr-miR-124a	7	`......._`	1	87
MIMAT0020120	xbo-miR-124	7	`......._`	1	87
MIMAT0019445	pma-miR-124-3p	7	`......._`	1	87
MIMAT0016263	sja-miR-124-3p	7	`......._`	1	87
MIMAT0015929	ppy-miR-506	7	`......._`	1	87
MIMAT0015747	ppy-miR-124	7	`......._`	1	87
MIMAT0015688	nvi-miR-124	7	`......._`	1	87
MIMAT0014712	api-miR-124	7	`......._`	1	87
MIMAT0014507	tgu-miR-124-3p	7	`......._`	1	87
MIMAT0014360	cqu-miR-124	7	`......._`	1	87
MIMAT0014282	aae-miR-124	7	`......._`	1	87
MIMAT0014116	bma-miR-124	7	`......._`	1	87
MIMAT0012906	eca-miR-124	7	`......._`	1	87
MIMAT0012685	isc-miR-124	7	`......._`	1	87
MIMAT0012639	dpu-miR-124	7	`......._`	1	87
MIMAT0012303	dps-miR-2516	1	`......._`	7	87
MIMAT0011645	ppc-miR-124	7	`......._`	1	87
MIMAT0011541	crm-miR-124a	7	`......._`	1	87
MIMAT0011239	sme-miR-124e-3p	7	`......._`	1	87
MIMAT0011238	sme-miR-124d-3p	7	`......._`	1	87
MIMAT0009666	spu-miR-124	7	`......._`	1	87
MIMAT0009625	sko-miR-124-3p	7	`......._`	1	87
MIMAT0009578	lgi-miR-124	7	`......._`	1	87
MIMAT0009555	cte-miR-124	7	`......._`	1	87
MIMAT0009482	bfl-miR-124-3p	7	`......._`	1	87
MIMAT0013774	bta-miR-124b	7	`......._`	1	87
MIMAT0009105	dya-miR-124	7	`......._`	1	87
MIMAT0009027	dwi-miR-124	7	`......._`	1	87
MIMAT0008939	dvi-miR-124-3p	7	`......._`	1	87
MIMAT0008847	dsi-miR-124	7	`......._`	1	87
MIMAT0008839	dse-miR-124	7	`......._`	1	87
MIMAT0008731	dpe-miR-124	7	`......._`	1	87
MIMAT0008688	dmo-miR-124	7	`......._`	1	87
MIMAT0008615	dgr-miR-124	7	`......._`	1	87
MIMAT0008547	der-miR-124	7	`......._`	1	87
MIMAT0008431	dan-miR-124	7	`......._`	1	87
MIMAT0008370	tca-miR-124-3p	7	`......._`	1	87
MIMAT0006657	cfa-miR-124	7	`......._`	1	87
MIMAT0006126	csa-miR-124	7	`......._`	1	87
MIMAT0006100	cin-miR-124-3p	7	`......._`	1	87
MIMAT0006083	odi-miR-124b	7	`......._`	1	87
MIMAT0006082	odi-miR-124a	7	`......._`	1	87
MIMAT0007114	oan-miR-124a-1-3p	7	`......._`	1	87
MIMAT0005779	pbi-miR-506	7	`......._`	1	87
MIMAT0005770	ptr-miR-506	7	`......._`	1	87
MIMAT0005762	mml-miR-506-3p	7	`......._`	1	87
MIMAT0005752	ssy-miR-506	7	`......._`	1	87
MIMAT0005145	ppt-miR1037	2	`_.......`	8	87
MIMAT0004102	mdo-miR-124a-3p	8	`......._`	2	87
MIMAT0003995	sme-miR-124c-3p	7	`......._`	1	87
MIMAT0003993	sme-miR-124b-3p	7	`......._`	1	87
MIMAT0003992	sme-miR-124a-3p	7	`......._`	1	87
MIMAT0003811	bta-miR-124a	7	`......._`	1	87
MIMAT0004198	bmo-miR-124	7	`......._`	1	87
MIMAT0003683	xtr-miR-124	8	`......._`	2	87
MIMAT0002897	tni-miR-124	7	`......._`	1	87
MIMAT0002896	fru-miR-124	7	`......._`	1	87
MIMAT0002878	hsa-miR-506-3p	7	`......._`	1	87
MIMAT0002471	lla-miR-124a	8	`......._`	2	87
MIMAT0002470	mml-miR-124a-3p	8	`......._`	2	87
MIMAT0002469	ptr-miR-124a	8	`......._`	2	87
MIMAT0002468	ppy-miR-124a	8	`......._`	2	87
MIMAT0002467	ppa-miR-124a	8	`......._`	2	87
MIMAT0002466	age-miR-124a	8	`......._`	2	87
MIMAT0002465	ggo-miR-124a	8	`......._`	2	87
MIMAT0002156	ssc-miR-124a	7	`......._`	1	87
MIMAT0001819	dre-miR-124-3p	7	`......._`	1	87
MIMAT0001499	aga-miR-124	7	`......._`	1	87
MIMAT0001473	ame-miR-124	7	`......._`	1	87
MIMAT0001229	dps-miR-124	7	`......._`	1	87
MIMAT0001174	gga-miR-124b	8	`......._`	2	87
MIMAT0001128	gga-miR-124a-3p	8	`......._`	2	87
MIMAT0000828	rno-miR-124-3p	7	`......._`	1	87
MIMAT0000494	cbr-miR-124a	7	`......._`	1	87
MIMAT0000422	hsa-miR-124-3p	7	`......._`	1	87
MIMAT0000351	dme-miR-124-3p	7	`......._`	1	87
MIMAT0000282	cel-miR-124-3p	7	`......._`	1	87
MIMAT0000134	mmu-miR-124-3p	7	`......._`	1	87
MIMAT0035581	dvi-miR-962-5p	8	`.a......`	1	87
MIMAT0034491	eca-miR-8957	1	`......c.`	8	87
MIMAT0032837	cel-miR-8210-5p	1	`......c.`	8	87
MIMAT0019344	mmu-miR-3964	8	`.a......`	1	87
MIMAT0019079	hsa-miR-548an	8	`......t.`	1	87
MIMAT0018656	tca-miR-3816-5p	8	`......g.`	1	87
MIMAT0012496	dsi-miR-962	8	`.a......`	1	87
MIMAT0011252	sme-miR-2159-5p	1	`......t.`	8	87
MIMAT0005476	dme-miR-962-5p	8	`.a......`	1	87
MIMAT0026621	hsa-miR-605-3p	8	`......c.`	1	87
MIMAT0037138	ata-miR5200-5p	3	`_......_`	8	75
MIMAT0036591	tch-miR-532-5p	3	`......__`	8	75
MIMAT0036460	mmu-miR-9768-3p	3	`......__`	8	75
MIMAT0036270	chi-miR-532-5p	3	`......__`	8	75
MIMAT0035546	bdi-miR5200b-5p	1	`_......_`	6	75
MIMAT0035544	bdi-miR5200a-5p	1	`_......_`	6	75
MIMAT0035153	efu-miR-532	3	`......__`	8	75
MIMAT0034308	cfa-miR-8818	1	`......__`	6	75
MIMAT0033543	sma-miR-8419-3p	2	`__......`	7	75
MIMAT0031601	bbe-miR-184-5p	2	`__......`	7	75
MIMAT0031426	mmu-miR-8120	3	`......__`	8	75
MIMAT0031206	stu-miR8028-5p	2	`__......`	7	75
MIMAT0030230	bdi-miR7745-5p	8	`_......_`	3	75
MIMAT0031130	sly-miR168a-3p	3	`......__`	8	75
MIMAT0029042	gga-miR-7444-5p	7	`_......_`	2	75
MIMAT0028845	mdo-miR-7386i-3p	8	`__......`	3	75
MIMAT0028741	mdo-miR-7364-3p	3	`......__`	8	75
MIMAT0028629	mdo-miR-7314-3p	6	`......__`	1	75
MIMAT0028090	mmu-miR-7092-5p	7	`......__`	2	75
MIMAT0027719	mmu-miR-6909-3p	1	`......__`	6	75
MIMAT0025133	mmu-miR-6386	3	`......__`	8	75
MIMAT0025082	mmu-miR-6339	3	`......__`	8	75
MIMAT0027332	ppe-miR6296	6	`_......_`	1	75
MIMAT0024556	cca-miR6108d	6	`__......`	1	75
MIMAT0024213	ggo-miR-940	6	`......__`	1	75
MIMAT0024131	ggo-miR-532	3	`......__`	8	75
MIMAT0023981	cgr-miR-532-5p	3	`......__`	8	75
MIMAT0022535	ola-miR-184-5p	2	`__......`	7	75
MIMAT0023072	tur-miR-184-5p	1	`__......`	6	75
MIMAT0021813	aca-miR-184-5p	1	`__......`	6	75
MIMAT0021539	asu-miR-5345b	6	`......__`	1	75
MIMAT0021537	asu-miR-5345a-5p	6	`......__`	1	75
MIMAT0021221	mtr-miR5235b	6	`__......`	1	75
MIMAT0021220	mtr-miR5235a	6	`__......`	1	75
MIMAT0018184	hsa-miR-3910	7	`......__`	2	75
MIMAT0018774	tca-miR-3857-5p	3	`......__`	8	75
MIMAT0018165	hsa-miR-3714	7	`......__`	2	75
MIMAT0018049	vvi-miR3638-5p	3	`......__`	8	75
MIMAT0016846	hsa-miR-4297	1	`......__`	6	75
MIMAT0016621	cin-miR-4066-3p	3	`......__`	8	75
MIMAT0015987	ppy-miR-532-5p	3	`......__`	8	75
MIMAT0017720	aly-miR3443-3p	2	`......__`	7	75
MIMAT0013940	ssc-miR-532-5p	3	`......__`	8	75
MIMAT0013235	eca-miR-532-5p	3	`......__`	8	75
MIMAT0012829	rno-miR-511-5p	3	`......__`	8	75
MIMAT0019168	bfl-miR-2059-5p	7	`......__`	2	75
MIMAT0009632	sko-miR-184-5p	1	`__......`	6	75
MIMAT0019148	bfl-miR-184-5p	2	`__......`	7	75
MIMAT0009121	dya-miR-184-5p	1	`__......`	6	75
MIMAT0008988	dwi-miR-184-5p	1	`__......`	6	75
MIMAT0008948	dvi-miR-184-5p	1	`__......`	6	75
MIMAT0008903	dsi-miR-184-5p	1	`__......`	6	75
MIMAT0008821	dse-miR-184-5p	1	`__......`	6	75
MIMAT0008700	dpe-miR-184-5p	1	`__......`	6	75
MIMAT0008673	dmo-miR-184-5p	1	`__......`	6	75
MIMAT0008566	dgr-miR-184-5p	1	`__......`	6	75
MIMAT0008511	der-miR-184-5p	1	`__......`	6	75
MIMAT0008435	dan-miR-184-5p	1	`__......`	6	75
MIMAT0008347	ptr-miR-940	6	`......__`	1	75
MIMAT0006758	cfa-miR-532	3	`......__`	8	75
MIMAT0006541	mml-miR-940	6	`......__`	1	75
MIMAT0006403	mml-miR-532-5p	3	`......__`	8	75
MIMAT0007654	gga-miR-1749-5p	8	`__......`	3	75
MIMAT0007548	gga-miR-1665	6	`_......_`	1	75
MIMAT0006019	odi-miR-1468	6	`_......_`	1	75
MIMAT0007002	oan-miR-1360	6	`......__`	1	75
MIMAT0005322	rno-miR-532-5p	3	`......__`	8	75
MIMAT0004983	hsa-miR-940	6	`......__`	1	75
MIMAT0004940	mmu-miR-511-5p	2	`......__`	7	75
MIMAT0026673	mdo-miR-184-5p	1	`__......`	6	75
MIMAT0020350	cel-miR-791-5p	2	`__......`	7	75
MIMAT0012123	sme-miR-748-5p	2	`__......`	7	75
MIMAT0003848	bta-miR-532	3	`......__`	8	75
MIMAT0017256	mmu-miR-700-5p	6	`_......_`	1	75
MIMAT0002889	mmu-miR-532-5p	3	`......__`	8	75
MIMAT0002888	hsa-miR-532-5p	3	`......__`	8	75
MIMAT0026526	gga-miR-184-5p	1	`__......`	6	75
MIMAT0000330	dme-miR-184-5p	1	`__......`	6	75
MIMAT0022690	mmu-miR-184-5p	1	`__......`	6	75