| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgcgcgg | 7 | ||
| MIMAT0016373 | gga-miR-3523 | 7 | ....... | 1 | 100 |
| MIMAT0014708 | hsv2-miR-H25 | 2 | ....... | 8 | 100 |
| MIMAT0006966 | oan-miR-1421b-3p | 7 | ....... | 1 | 100 |
| MIMAT0030744 | prd-miR-7942-5p | 2 | _...... | 7 | 85 |
| MIMAT0031133 | aja-miR-1893 | 2 | _...... | 7 | 85 |
| MIMAT0029064 | gga-miR-7455-5p | 3 | _...... | 8 | 85 |
| MIMAT0027639 | hsa-miR-6869-3p | 8 | _...... | 3 | 85 |
| MIMAT0022682 | hvsa-miR-HSUR5-5p | 7 | _...... | 2 | 85 |
| MIMAT0019011 | hsa-miR-4479 | 2 | _...... | 7 | 85 |
| MIMAT0018355 | hsa-miR-3939 | 8 | ......_ | 3 | 85 |
| MIMAT0016137 | ppy-miR-937 | 8 | _...... | 3 | 85 |
| MIMAT0013861 | bta-miR-2903 | 8 | _...... | 3 | 85 |
| MIMAT0013053 | eca-miR-675 | 3 | _...... | 8 | 85 |
| MIMAT0017352 | hsa-miR-2277-5p | 2 | _...... | 7 | 85 |
| MIMAT0008344 | ptr-miR-937 | 8 | _...... | 3 | 85 |
| MIMAT0007879 | mmu-miR-1893 | 2 | _...... | 7 | 85 |
| MIMAT0004980 | hsa-miR-937-3p | 8 | _...... | 3 | 85 |
