| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgcttgat | 8 | ||
| MIMAT0009150 | bkv-miR-B1-3p | 1 | ........ | 8 | 100 |
| MIMAT0009148 | jcv-miR-J1-3p | 1 | ........ | 8 | 100 |
| MIMAT0035258 | gsa-miR-36-5p | 2 | _....... | 8 | 87 |
| MIMAT0034765 | eca-miR-9184 | 2 | _....... | 8 | 87 |
| MIMAT0030213 | bdi-miR7738-3p | 2 | ......._ | 8 | 87 |
| MIMAT0022577 | ola-miR-137 | 2 | ......._ | 8 | 87 |
| MIMAT0020551 | osa-miR5071 | 7 | ......._ | 1 | 87 |
| MIMAT0020052 | sko-miR-4835-3p | 7 | ......._ | 1 | 87 |
| MIMAT0018620 | tca-miR-3802-5p | 2 | ......._ | 8 | 87 |
| MIMAT0018079 | hsa-miR-1273e | 2 | ......._ | 8 | 87 |
| MIMAT0017605 | aly-miR825-5p | 7 | ......._ | 1 | 87 |
| MIMAT0035684 | bra-miR408-3p | 1 | ......t. | 8 | 87 |
| MIMAT0035336 | gsa-miR-9395-5p | 1 | .t...... | 8 | 87 |
| MIMAT0034775 | efu-miR-9195 | 8 | ......c. | 1 | 87 |
| MIMAT0029976 | mtr-miR2667b | 1 | .c...... | 8 | 87 |
| MIMAT0029369 | lja-miR7542 | 1 | ......c. | 8 | 87 |
| MIMAT0013474 | mtr-miR2667a | 1 | .c...... | 8 | 87 |
| MIMAT0007504 | gga-miR-1632-5p | 1 | ......t. | 8 | 87 |
| MIMAT0003920 | mdv1-miR-M1-5p | 1 | ......t. | 8 | 87 |
| MIMAT0022706 | hsa-miR-561-5p | 8 | .c...... | 1 | 87 |
| MIMAT0036330 | ocu-miR-498 | 8 | _......_ | 3 | 75 |
| MIMAT0035369 | nve-miR-9414-5p | 3 | __...... | 8 | 75 |
| MIMAT0035316 | gsa-miR-153-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035218 | dme-miR-9377-3p | 1 | __...... | 6 | 75 |
| MIMAT0034835 | efu-miR-9237b | 2 | __...... | 7 | 75 |
| MIMAT0034783 | efu-miR-9198e | 1 | ......__ | 6 | 75 |
| MIMAT0033619 | sma-miR-124b-3p | 6 | __...... | 1 | 75 |
| MIMAT0033238 | ppc-miR-8346-5p | 1 | __...... | 6 | 75 |
| MIMAT0033210 | ppc-miR-8333-5p | 6 | __...... | 1 | 75 |
| MIMAT0031370 | stu-miR169f-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030396 | ptc-miR6459b | 8 | _......_ | 3 | 75 |
| MIMAT0030269 | bdi-miR7761-3p | 2 | __...... | 7 | 75 |
| MIMAT0029875 | mmu-miR-7680-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029832 | mmu-miR-7663-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029553 | ipu-miR-7557 | 1 | ......__ | 6 | 75 |
| MIMAT0029349 | lja-miR7526h | 6 | __...... | 1 | 75 |
| MIMAT0029348 | lja-miR7526g | 6 | __...... | 1 | 75 |
| MIMAT0029347 | lja-miR7526f | 6 | __...... | 1 | 75 |
| MIMAT0029346 | lja-miR7526e | 6 | __...... | 1 | 75 |
| MIMAT0029345 | lja-miR7526d | 6 | __...... | 1 | 75 |
| MIMAT0029344 | lja-miR7526c | 6 | __...... | 1 | 75 |
| MIMAT0029343 | lja-miR7526b | 6 | __...... | 1 | 75 |
| MIMAT0029342 | lja-miR7526a | 6 | __...... | 1 | 75 |
| MIMAT0028585 | mdo-miR-7298-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026177 | cme-miR167e | 6 | _......_ | 1 | 75 |
| MIMAT0024562 | cca-miR6116-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024558 | cca-miR6108e-3p | 6 | __...... | 1 | 75 |
| MIMAT0023286 | osa-miR5814 | 7 | __...... | 2 | 75 |
| MIMAT0023064 | tur-miR-5733-5p | 3 | __...... | 8 | 75 |
| MIMAT0022523 | ssl-miR1078 | 1 | __...... | 6 | 75 |
| MIMAT0021687 | sbi-miR5389 | 1 | _......_ | 6 | 75 |
| MIMAT0020714 | bdi-miR5170 | 8 | __...... | 3 | 75 |
| MIMAT0018270 | gma-miR4369 | 8 | __...... | 3 | 75 |
| MIMAT0018808 | tca-miR-3863-5p | 8 | __...... | 3 | 75 |
| MIMAT0018768 | tca-miR-87b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016590 | cin-miR-4050-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017868 | rno-miR-3580-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016074 | ppy-miR-636 | 3 | ......__ | 8 | 75 |
| MIMAT0015919 | ppy-miR-498 | 8 | _......_ | 3 | 75 |
| MIMAT0017726 | aly-miR3445-3p.2 | 1 | __...... | 6 | 75 |
| MIMAT0017637 | aly-miR847-5p | 2 | __...... | 7 | 75 |
| MIMAT0014759 | api-miR-3023 | 3 | _......_ | 8 | 75 |
| MIMAT0014415 | cqu-miR-932-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014270 | aae-miR-932-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012560 | aqc-miR167 | 6 | _......_ | 1 | 75 |
| MIMAT0011420 | sme-miR-2203-3p | 6 | __...... | 1 | 75 |
| MIMAT0012168 | sme-miR-753e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011268 | sme-miR-754d | 3 | ......__ | 8 | 75 |
| MIMAT0011237 | sme-miR-754c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011236 | sme-miR-754b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011395 | sme-miR-753b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009812 | nve-miR-2044-5p | 8 | __...... | 3 | 75 |
| MIMAT0009712 | cte-miR-1996b | 6 | __...... | 1 | 75 |
| MIMAT0019132 | tca-miR-932-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019110 | tca-miR-87a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008171 | ptr-miR-498 | 8 | _......_ | 3 | 75 |
| MIMAT0006479 | mml-miR-636 | 3 | ......__ | 8 | 75 |
| MIMAT0006360 | mml-miR-498 | 8 | _......_ | 3 | 75 |
| MIMAT0031078 | mml-miR-9-3-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006069 | csa-miR-1473 | 6 | _......_ | 1 | 75 |
| MIMAT0006067 | cin-miR-1473-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006024 | odi-miR-1473 | 6 | _......_ | 1 | 75 |
| MIMAT0005207 | ppt-miR1076-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004368 | ppt-miR897 | 8 | __...... | 3 | 75 |
| MIMAT0011089 | mtr-miR168a | 2 | ......__ | 7 | 75 |
| MIMAT0004021 | sme-miR-754a | 3 | ......__ | 8 | 75 |
| MIMAT0003306 | hsa-miR-636 | 3 | ......__ | 8 | 75 |
| MIMAT0002824 | hsa-miR-498 | 8 | _......_ | 3 | 75 |
| MIMAT0022899 | ptc-miR169n-3p | 7 | ......__ | 2 | 75 |
