| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggatgg | 7 | ||
| MIMAT0035424 | nve-miR-9465 | 2 | ....... | 8 | 100 |
| MIMAT0033716 | pxy-miR-8504 | 7 | ....... | 1 | 100 |
| MIMAT0032850 | ppc-miR-2235b-5p | 7 | ....... | 1 | 100 |
| MIMAT0027919 | mmu-miR-7007-3p | 8 | ....... | 2 | 100 |
| MIMAT0027712 | mmu-miR-6906-5p | 2 | ....... | 8 | 100 |
| MIMAT0017384 | ssc-miR-432-3p | 1 | ....... | 7 | 100 |
| MIMAT0011945 | bta-miR-2392 | 2 | ....... | 8 | 100 |
| MIMAT0026874 | mml-miR-432-3p | 1 | ....... | 7 | 100 |
| MIMAT0007635 | gga-miR-1733 | 2 | ....... | 8 | 100 |
| MIMAT0003916 | ppt-miR1221-5p | 1 | ....... | 7 | 100 |
| MIMAT0002815 | hsa-miR-432-3p | 2 | ....... | 8 | 100 |
| MIMAT0037280 | ame-miR-9876 | 3 | _...... | 8 | 85 |
| MIMAT0037245 | ata-miR319-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036400 | gma-miR9763 | 8 | _...... | 3 | 85 |
| MIMAT0036395 | gma-miR9760 | 1 | ......_ | 6 | 85 |
| MIMAT0036228 | chi-miR-432-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035802 | tae-miR9676-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035179 | efu-miR-8915 | 2 | _...... | 7 | 85 |
| MIMAT0035049 | efu-miR-9322 | 3 | ......_ | 8 | 85 |
| MIMAT0034808 | efu-miR-9216 | 3 | ......_ | 8 | 85 |
| MIMAT0034439 | eca-miR-8911 | 3 | ......_ | 8 | 85 |
| MIMAT0034431 | cfa-miR-8834b | 1 | ......_ | 6 | 85 |
| MIMAT0034412 | cfa-miR-8902 | 6 | ......_ | 1 | 85 |
| MIMAT0032923 | ppc-miR-8234-3p | 8 | _...... | 3 | 85 |
| MIMAT0032882 | ppc-miR-36-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032656 | ssa-miR-462b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032654 | ssa-miR-462a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031474 | ppe-miR393a | 6 | ......_ | 1 | 85 |
| MIMAT0030996 | hsa-miR-8069 | 1 | _...... | 6 | 85 |
| MIMAT0030680 | prd-miR-40-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030228 | bdi-miR7744-5p | 2 | _...... | 7 | 85 |
| MIMAT0029663 | cbn-miR-789b | 6 | _...... | 1 | 85 |
| MIMAT0029594 | cbr-miR-7583c-3p | 6 | _...... | 1 | 85 |
| MIMAT0029586 | cbr-miR-7583b | 6 | _...... | 1 | 85 |
| MIMAT0029585 | cbr-miR-7583a-3p | 6 | _...... | 1 | 85 |
| MIMAT0028815 | mdo-miR-7379-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028680 | mdo-miR-7336-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028616 | mdo-miR-7309-5p | 3 | _...... | 8 | 85 |
| MIMAT0028507 | mdo-miR-7268-3p | 2 | _...... | 7 | 85 |
| MIMAT0028505 | mdo-miR-7267-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028446 | mmu-miR-7239-5p | 7 | _...... | 2 | 85 |
| MIMAT0028352 | mml-miR-7196-5p | 7 | _...... | 2 | 85 |
| MIMAT0028193 | dev-miR-D18-3p | 6 | _...... | 1 | 85 |
| MIMAT0028167 | hcmv-miR-US29-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026445 | sbi-miR6232a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026404 | sbi-miR6220-5p | 8 | _...... | 3 | 85 |
| MIMAT0027944 | mmu-miR-7020-5p | 3 | _...... | 8 | 85 |
| MIMAT0027794 | mmu-miR-6947-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027389 | hsa-miR-6744-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025189 | ptc-miR6463 | 1 | ......_ | 6 | 85 |
| MIMAT0024369 | ppy-miR-1193 | 2 | _...... | 7 | 85 |
| MIMAT0024256 | ggo-miR-1193 | 2 | _...... | 7 | 85 |
| MIMAT0024037 | ptr-miR-2392 | 3 | _...... | 8 | 85 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 2 | _...... | 7 | 85 |
| MIMAT0023489 | hco-miR-5979 | 1 | ......_ | 6 | 85 |
| MIMAT0023253 | osa-miR5788 | 1 | ......_ | 6 | 85 |
| MIMAT0022338 | cin-miR-5605-3p | 3 | _...... | 8 | 85 |
| MIMAT0022099 | aca-miR-5466 | 1 | ......_ | 6 | 85 |
| MIMAT0021604 | gma-miR862b | 3 | ......_ | 8 | 85 |
| MIMAT0021564 | asu-miR-44b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021439 | asu-miR-36a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019914 | hsa-miR-4764-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019269 | oar-miR-1193-5p | 2 | _...... | 7 | 85 |
| MIMAT0019073 | hsa-miR-4534 | 1 | _...... | 6 | 85 |
| MIMAT0019043 | hsa-miR-2392 | 3 | _...... | 8 | 85 |
| MIMAT0018595 | ame-miR-3728 | 6 | _...... | 1 | 85 |
| MIMAT0018120 | hsa-miR-3691-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016278 | sja-miR-2d-5p | 8 | ......_ | 3 | 85 |
| MIMAT0015707 | nvi-miR-3478 | 3 | ......_ | 8 | 85 |
| MIMAT0017740 | ath-miR774b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015049 | hsa-miR-1193 | 2 | _...... | 7 | 85 |
| MIMAT0014949 | mmu-miR-3109-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020364 | ath-miR2934-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015324 | zma-miR169m-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013260 | mtr-miR2589 | 8 | ......_ | 3 | 85 |
| MIMAT0007828 | osa-miR1874-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005427 | cre-miR1169-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005210 | ppt-miR1078 | 3 | ......_ | 8 | 85 |
| MIMAT0005209 | ppt-miR1077-3p | 3 | _...... | 8 | 85 |
| MIMAT0012127 | sme-miR-756-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 3 | _...... | 8 | 85 |
| MIMAT0020915 | osa-miR319a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015114 | cel-miR-238-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020307 | cel-miR-40-5p | 3 | ......_ | 8 | 85 |
